Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01277 ATGGCCGAACCCACTTACACCGGCGTCCGTAAACGCAAATGGGGCAAATGGGTCTCCGAAATCCGCCAACCCGGCAAAAAAACCCGCATCTGGCTCGGCAGCTACCACCTTCCCCAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCCACCTCCGCGGCCCCAACGCCCGCCTTAACTTCCCCGACCTCATCGACTCCTTCCCCCGCCCCGCCACCTCCTCTCCCGACGACATTCAGGCCGCTGCCCACATGGCTGCATTGCGCCTCGCCAACACCAAGCCGCCGCCTGCTGCTCAACACCCACCGGCGCCGGTTCGAATCGGGCTGTCTCCAAGCCAAATTCAGGCCATTAATGAGTCGCCGTTGGATTCTCCGACGATGTGGATGCAGATGGCGGCGGAGGCGCTTTGTTTAGAGGATTATTTGTGCGATGGATTTGATGTGGAAGATAATTCCATTTGGGATTATTCTTCACTCTAA 483 59.63 MAEPTYTGVRKRKWGKWVSEIRQPGKKTRIWLGSYHLPQMAAAAYDVAALHLRGPNARLNFPDLIDSFPRPATSSPDDIQAAAHMAALRLANTKPPPAAQHPPAPVRIGLSPSQIQAINESPLDSPTMWMQMAAEALCLEDYLCDGFDVEDNSIWDYSSL 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11275482 11275964 - CmoCh09G012770.1 Cmo09g01277 389279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01277 160 ProSiteProfiles AP2/ERF domain profile. 5 62 IPR001471 GO:0003700|GO:0006355
Cmo09g01277 160 Pfam AP2 domain 5 54 IPR001471 GO:0003700|GO:0006355
Cmo09g01277 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 5 156 - -
Cmo09g01277 160 Gene3D AP2/ERF domain 5 63 IPR036955 GO:0003700|GO:0006355
Cmo09g01277 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 156 - -
Cmo09g01277 160 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Cmo09g01277 160 SUPERFAMILY DNA-binding domain 5 63 IPR016177 GO:0003677
Cmo09g01277 160 PRINTS Ethylene responsive element binding protein signature 6 17 IPR001471 GO:0003700|GO:0006355
Cmo09g01277 160 PRINTS Ethylene responsive element binding protein signature 44 64 IPR001471 GO:0003700|GO:0006355
Cmo09g01277 160 SMART rav1_2 5 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00896 Cmo-Chr1:4988566 Cmo09g01277 Cmo-Chr9:11275482 9.81E-61 dispersed
Cmo09g01277 Cmo-Chr9:11275482 Cmo12g01298 Cmo-Chr12:11419240 1.92E-32 dispersed
Cmo09g01277 Cmo-Chr9:11275482 Cmo09g01282 Cmo-Chr9:11322679 1.03E-52 proximal
Cmo01g00895 Cmo-Chr1:4978025 Cmo09g01277 Cmo-Chr9:11275482 1.31E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10401 PF00847 AP2 2.00E-11 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01277 - - csv:101207003 238.039