Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo09g01282 | ATGGGAGATCCTAGCTCAATGGGCAGCCATGGTGCAGCGACGTCGAGCTACCGAGGCGTTCGCAAGAGGAAATGGGGCAAATGGGTGTCGGAGATTCGCGAGCCAGGAAAGAAGACGAGAATTTGGTTAGGGAGTTTCGAGACACCAGAGATGGCGGCAGCGGCTTACGATGCCGCCGCCTATCATTTCCGTGGTCACGATGCTCGCCTCAACTTCCCACATCTTGCCAACTCTCTCCCCTTCCCTAATGGCTCCACTCCTGATGATATCCGTTTCGCTGCCCATAGGGCAGCATTGCGAGTACGAACAACACCAGGTGTTGTAGCGGAGGGTGATCGGAGTTCCACGTCGAGTGTTGCTCCGGTCACTGTTCGACTATCGCCGAGCCAAATTCAGGCGATTAACGAGTCGCCGTTGGACTCGCCGAAGATGTGGATGGAAATGTCGTCGGAGTTTTCGAATGGGACTGTGTTTGTTGATGAGATGGAGGATGCGATGTGGGAGAATATGCATAATGATTCATTGTGGGATCCTTAG | 537 | 53.82 | MGDPSSMGSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDAAAYHFRGHDARLNFPHLANSLPFPNGSTPDDIRFAAHRAALRVRTTPGVVAEGDRSSTSSVAPVTVRLSPSQIQAINESPLDSPKMWMEMSSEFSNGTVFVDEMEDAMWENMHNDSLWDP | 178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 11322679 | 11323215 | - | CmoCh09G012820.1 | Cmo09g01282 | 389284 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo09g01282 | 178 | Pfam | AP2 domain | 16 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g01282 | 178 | SUPERFAMILY | DNA-binding domain | 15 | 74 | IPR016177 | GO:0003677 | |
Cmo09g01282 | 178 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 | 5 | 177 | - | - | |
Cmo09g01282 | 178 | PRINTS | Ethylene responsive element binding protein signature | 17 | 28 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g01282 | 178 | PRINTS | Ethylene responsive element binding protein signature | 39 | 55 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g01282 | 178 | Gene3D | AP2/ERF domain | 16 | 74 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo09g01282 | 178 | ProSiteProfiles | AP2/ERF domain profile. | 16 | 73 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g01282 | 178 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 5 | 177 | - | - | |
Cmo09g01282 | 178 | SMART | rav1_2 | 16 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g01282 | 178 | CDD | AP2 | 15 | 75 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00895 | Cmo-Chr1:4978025 | Cmo09g01282 | Cmo-Chr9:11322679 | 8.54E-85 | dispersed | |
Cmo09g01282 | Cmo-Chr9:11322679 | Cmo16g01177 | Cmo-Chr16:8390470 | 8.26E-32 | dispersed | |
Cmo09g01277 | Cmo-Chr9:11275482 | Cmo09g01282 | Cmo-Chr9:11322679 | 1.03E-52 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10402 | PF00847 | AP2 | 5.90E-14 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo09g01282 | - | - | csv:101207243 | 296.204 |