Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01282 ATGGGAGATCCTAGCTCAATGGGCAGCCATGGTGCAGCGACGTCGAGCTACCGAGGCGTTCGCAAGAGGAAATGGGGCAAATGGGTGTCGGAGATTCGCGAGCCAGGAAAGAAGACGAGAATTTGGTTAGGGAGTTTCGAGACACCAGAGATGGCGGCAGCGGCTTACGATGCCGCCGCCTATCATTTCCGTGGTCACGATGCTCGCCTCAACTTCCCACATCTTGCCAACTCTCTCCCCTTCCCTAATGGCTCCACTCCTGATGATATCCGTTTCGCTGCCCATAGGGCAGCATTGCGAGTACGAACAACACCAGGTGTTGTAGCGGAGGGTGATCGGAGTTCCACGTCGAGTGTTGCTCCGGTCACTGTTCGACTATCGCCGAGCCAAATTCAGGCGATTAACGAGTCGCCGTTGGACTCGCCGAAGATGTGGATGGAAATGTCGTCGGAGTTTTCGAATGGGACTGTGTTTGTTGATGAGATGGAGGATGCGATGTGGGAGAATATGCATAATGATTCATTGTGGGATCCTTAG 537 53.82 MGDPSSMGSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDAAAYHFRGHDARLNFPHLANSLPFPNGSTPDDIRFAAHRAALRVRTTPGVVAEGDRSSTSSVAPVTVRLSPSQIQAINESPLDSPKMWMEMSSEFSNGTVFVDEMEDAMWENMHNDSLWDP 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11322679 11323215 - CmoCh09G012820.1 Cmo09g01282 389284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01282 178 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Cmo09g01282 178 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Cmo09g01282 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 5 177 - -
Cmo09g01282 178 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Cmo09g01282 178 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Cmo09g01282 178 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Cmo09g01282 178 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Cmo09g01282 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 177 - -
Cmo09g01282 178 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Cmo09g01282 178 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00895 Cmo-Chr1:4978025 Cmo09g01282 Cmo-Chr9:11322679 8.54E-85 dispersed
Cmo09g01282 Cmo-Chr9:11322679 Cmo16g01177 Cmo-Chr16:8390470 8.26E-32 dispersed
Cmo09g01277 Cmo-Chr9:11275482 Cmo09g01282 Cmo-Chr9:11322679 1.03E-52 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10402 PF00847 AP2 5.90E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01282 - - csv:101207243 296.204