Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01297 ATGGGCTGCCTTTGCTCAAGAGATTCCTCAGAACCAGAGGATGGCAGTCAATTATCTGAAAAACATGTGGATGAATCTTCGGTTCAATTGGTTGCTCCTTCTCCCTCAAAAAGAGAGAATATGTTGCAAGAGATTCAGTTGTCAAGGCAGGAATCAAAAGCAAATGGGAGTTCTGTTCATAAAAGAAAGGGTAATGTTGGGTCTGTTCATCGAGCAAAGGAGGGTGATGAATCTGTGAATAAAGCCATGAAGGCTGCAAAAGTAAATGATGATAATGCTTCGGGAGGTGGAAAACGGCCTGACATTTTCAGGTTAGCTAGCTTGTCTAAAGCGGTTGAAGCTGAACATGTCATGGCTGGATGGCCTTCATGGTTAGCTTCTGTTGCTGGAGAAGCTATCAAAGGGTGGGTGCCTCGCCGGGTTGACTCCTTTGAAAAGTTGGATAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGTGACCTTGAAACTGGTAAAATCGTGGCATTGAAAAAAGTGAGATTTGTAAATAAGGATCCCGAAAGTGTCCGTTTTATGGCTAGGGAAATATATATTTTGCGCAAACTGGATCATCCAAATGTTATGAAGCTCGAGGCTCTAGTCGCTTCCAGAATGTCGAGCAACTTGTACCTTGTTTTTGAGTACATGGAGCATGACCTTGCTGGTCTTGTGGCAGCTCCTGGACATAAGTTTACGGAGGCTCAAATTAAATGTTACGTGCAACAATTGCTGCATGGACTCGAACACTGTCATAGTCGGGGAATTCTACACCGGGATATCAAAGCTTCAAATCTTCTCATTGACAATAATGGTGTGCTCAAGATTGCAGACTTTGGACTTGCTACCTCTTTTCATCCTGATCGAAAGCAGCCATTGACTAGTCGGGTAGTGACGTTGTGGTACAGGGCACCCGAGCTTTTGCTCGGCGCTACCCAATATGGACCTGCCATAGATCTCTGGAGCTGTGGTTGTATCGTTGCTGAACTATTTGCTGGAAAACCTATTATGCCAGGAAGAACAGAGGTGGAACAAATCCACAAGATTTTTAAGCTCTGTGGCTCACCATCTGAGGAATTCTGGCGGAGAACAAAGTTGCCACATGCAACCAGCTACAAACCACAACACCGTTATAAAAGCTGCCTCTCTGATACTTACAAAAGTTTCCCTTCTTCAGCTCTGGCTCTCATTAATAAGCTTCTTGCTATTGAACCAGAGCACAGAGGATCAGCTTCTTCCGCTCTTGGAAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGACCCCTCAAGCTTACCAAAGTATGCTCCGAGCAAAGAATTTGATGCCAAGCTGCGGAATGAAGAAGAAAGGAAGAGAAAAGCAGAAGCTGTGAAGGGATGGCATCCTGAATCAGTAAGAAGGGGCTCAAGAGACACCAAGGTAGTTCCTACTCCTGAATTCAGTGCTCAAGGAGATGTGACCATAAAGGTACACCCGCTCGCGAAAAAGATTAACAAATACACCTCCCAAGAGGACAGCGAACCTCCGAGAGTTGCGCAGAGTAGGTACGGCCACTCGACATCTATGGTGCACCCAAGCATTGCAGGTTCATGGGCCAAGCCTTCTGGAGCCACAAGAAATTGTGCAGAGTTAAAGACACAAAAATCTCAGATGCATCAGCCAGTGGGAGATTTATCAACCTCTGCTCTCAAGAAGGAAGAGGGTTGTGTTCAAAAGAAGACCAGAATGCAATTCTCAGGACCGTTGGTGGCTACAGGGGGAACCATTGAAGACTTGTTGAAGGATCACGAGAGACAAATCCAGCAGGCTTTTCGAAAGGCACGTCTCGACAAAGAGAACAACATAAGTTAG 1878 45.37 MGCLCSRDSSEPEDGSQLSEKHVDESSVQLVAPSPSKRENMLQEIQLSRQESKANGSSVHKRKGNVGSVHRAKEGDESVNKAMKAAKVNDDNASGGGKRPDIFRLASLSKAVEAEHVMAGWPSWLASVAGEAIKGWVPRRVDSFEKLDKIGQGTYSSVYKARDLETGKIVALKKVRFVNKDPESVRFMAREIYILRKLDHPNVMKLEALVASRMSSNLYLVFEYMEHDLAGLVAAPGHKFTEAQIKCYVQQLLHGLEHCHSRGILHRDIKASNLLIDNNGVLKIADFGLATSFHPDRKQPLTSRVVTLWYRAPELLLGATQYGPAIDLWSCGCIVAELFAGKPIMPGRTEVEQIHKIFKLCGSPSEEFWRRTKLPHATSYKPQHRYKSCLSDTYKSFPSSALALINKLLAIEPEHRGSASSALGSEFFRTEPLPCDPSSLPKYAPSKEFDAKLRNEEERKRKAEAVKGWHPESVRRGSRDTKVVPTPEFSAQGDVTIKVHPLAKKINKYTSQEDSEPPRVAQSRYGHSTSMVHPSIAGSWAKPSGATRNCAELKTQKSQMHQPVGDLSTSALKKEEGCVQKKTRMQFSGPLVATGGTIEDLLKDHERQIQQAFRKARLDKENNIS 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11502373 11508090 + CmoCh09G012970.1 Cmo09g01297 389299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01297 625 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524
Cmo09g01297 625 SUPERFAMILY Protein kinase-like (PK-like) 137 436 IPR011009 -
Cmo09g01297 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Cmo09g01297 625 MobiDBLite consensus disorder prediction 461 486 - -
Cmo09g01297 625 ProSiteProfiles Protein kinase domain profile. 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g01297 625 PANTHER CELL DIVISION PROTEIN KINASE 70 618 - -
Cmo09g01297 625 Gene3D Transferase(Phosphotransferase) domain 1 227 468 - -
Cmo09g01297 625 SMART serkin_6 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g01297 625 CDD STKc_CDK9_like 144 428 - -
Cmo09g01297 625 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 70 618 - -
Cmo09g01297 625 Gene3D Phosphorylase Kinase; domain 1 131 226 - -
Cmo09g01297 625 Coils Coil 602 622 - -
Cmo09g01297 625 MobiDBLite consensus disorder prediction 29 62 - -
Cmo09g01297 625 MobiDBLite consensus disorder prediction 1 79 - -
Cmo09g01297 625 Pfam Protein kinase domain 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g01297 625 Coils Coil 446 466 - -
Cmo09g01297 625 MobiDBLite consensus disorder prediction 461 482 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01297 Cmo-Chr9:11502373 Cmo16g00430 Cmo-Chr16:2044031 0 dispersed
Cmo09g01213 Cmo-Chr9:9362476 Cmo09g01297 Cmo-Chr9:11502373 7.49E-150 transposed
Cmo01g00886 Cmo-Chr1:4835903 Cmo09g01297 Cmo-Chr9:11502373 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74590 PF00069 Pkinase 8.10E-72 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01297 K08819 - csv:101208709 1050.04