Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01300 ATGGCTGAGTTGAGGTTTTCATCAATGTTGTTGCCTGTTTTGGTGCTGCTACTTGTGGCGGCGGCCGCGGCGGCTTTCAGCCAGAATGGTAGTACGGACGGCGGCGGAGGGAGGCCGGCGATGGTGCCTGCCATGTTCATATTTGGAGACTCTTTGATTGATAATGGGAATAATAACAATCTTCCGACGTTTGCAAGAGCTAACTATTTCCCTTATGGTATTGATTTTGCTGATGGCCCAACTGGTCGTTTCTCCAATGGATACACTATTGTTGATGAAATAGCGAAGCTCCTAGGACTACCCTTAATTCCTCCGAGCGCAGCTCCAACAACCGGACCGCTACGCGGACTAAATTATGCGTCGGCTGCTTCGGGAATTCTCGATATTACTGGAAGAAACTTTATCGGTCGCATACCCTTCAATCAACAAATAAGCAACTTCGAGAACACGCTGGATCAAATAACCGGCAACCTAGGAGCCGCCACGGTGGCTCCCGTGGTGGCTCGCTGCATATTCTTCGTTGGTATGGGCAGTAACGACTACCTTAACAACTATCTAATGCCTAATTATCCTACCAGATCTCAATACAATAGCCGACAGTTCGCCGATCTTTTGACCCAACAGTACACTCAGCAACTCAGTAGGCTTTACAACCTCGGAGCTCGGAAGTTCATCATCCCCGGTATCGGAACAATGGAGTGCATTCCCAATGTATTAGCTAGAAGCTCCGATGGAAGATGCTCAGAAGAAGTAAGCCAGCTCGTTCGAGATTTCAACGCGAACGTTAGAATAATGATCGGAAACTTGAATGCCAATCTTCCCGGTTCGAGGTTCACTTACGTTAATATTGCTCGTATGAATGGAGATATCCTTGCAAATCCTAGAGCTTATGGATTCACAGTGGCGGATCGTGGGTGCTGTGGGATTGGGAGGAACAGGGGACAGATAACATGTCTTCCATACCAAATGCCTTGTCTGAATCGAGACCAGTATGTGTTTTGGGATGCGTTTCATCCAACTGAGAGAGTGAATATCATCATGGCGAGAAGGGCTTTCAATGGCGACATGTCCGTTGCTTACCCTTTTAACATACAACAGCTTGCCAATCTTGATATCTAA 1119 47.27 MAELRFSSMLLPVLVLLLVAAAAAAFSQNGSTDGGGGRPAMVPAMFIFGDSLIDNGNNNNLPTFARANYFPYGIDFADGPTGRFSNGYTIVDEIAKLLGLPLIPPSAAPTTGPLRGLNYASAASGILDITGRNFIGRIPFNQQISNFENTLDQITGNLGAATVAPVVARCIFFVGMGSNDYLNNYLMPNYPTRSQYNSRQFADLLTQQYTQQLSRLYNLGARKFIIPGIGTMECIPNVLARSSDGRCSEEVSQLVRDFNANVRIMIGNLNANLPGSRFTYVNIARMNGDILANPRAYGFTVADRGCCGIGRNRGQITCLPYQMPCLNRDQYVFWDAFHPTERVNIIMARRAFNGDMSVAYPFNIQQLANLDI 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11521885 11526444 - CmoCh09G013000.1 Cmo09g01300 389302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01300 372 Gene3D SGNH hydrolase 38 355 IPR036514 -
Cmo09g01300 372 Pfam GDSL-like Lipase/Acylhydrolase 46 350 IPR001087 GO:0016788
Cmo09g01300 372 PANTHER OS05G0419800 PROTEIN 13 370 - -
Cmo09g01300 372 CDD SGNH_plant_lipase_like 43 355 IPR035669 -
Cmo09g01300 372 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 13 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01300 - - - csv:101209444 626.706
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g00880 Cmo09g01300 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01300 Cmo-Chr9:11521885 Cmo18g00244 Cmo-Chr18:1611522 1.53E-118 dispersed
Cmo20g01168 Cmo-Chr20:11493507 Cmo09g01300 Cmo-Chr9:11521885 1.31E-74 dispersed
Cmo04g03154 Cmo-Chr4:21808843 Cmo09g01300 Cmo-Chr9:11521885 0 transposed
Cmo10g01085 Cmo-Chr10:5945643 Cmo09g01300 Cmo-Chr9:11521885 4.00E-76 transposed
Cmo12g00991 Cmo-Chr12:9278278 Cmo09g01300 Cmo-Chr9:11521885 2.34E-71 transposed
Cmo01g00880 Cmo-Chr1:4787577 Cmo09g01300 Cmo-Chr9:11521885 1.76E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1660 Blo01g01668 Blo12g00832 . . Bpe02g00274 Bpe04g00304 . . . . Cma01g00840 . . . . . . Bhi04g02590 . . . . . . . . . . . . . . . . . . . . Cme09g00036 . . Bda11g00935 . . . . . . Cmo01g00880 Cmo09g01300 . . . Car09g01143 . . . . . . . . . . . . . . . . Lsi08g00047 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002428 2 2 3 2 3 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 3 2 3 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01300 Cmo_Chr09 FPKM 4.241953 5.92849 5.655398 4.255648 2.609951 2.785104 2.01829 2.620388 3.502006 3.512153