Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo09g01328 | ATGAGGGATTGGCTTCCACTGTGGAAAAGAGCCGAGAGGAGGAACAATCTGGTCCCTAAATCTCCTGAGCCAGTCACTGTGAAGCAGATGCAATCCACAACTGGTGGTGCTACTGGCAGTCGTAGCGGCGGCGGCGGTAGCGGCGGCGGACTTGCTCGCTTCCGCTCTGCTCCGGCTGCCTGGTTGGAAGCGCTTTTGGAGGACGAGGAGGAGGACCTACTCAGGCCTAATCAGTGCTTGACTCAGCTTCTCGCTGGCAACTCCTCCGACCTAGACTCCCCCGCGGATCAGGCCTTGTTCGAGCCCAATCCCTCCGCTGGTTTCCAGAGGCAAAATAGCTCTCCGGCTGAGTTTCTCGGCGCCTCCGGAATCGGGGAAGGATTTTACTCTTCCTATGCTATCAATTCCTCGGCCGCTCTCGAGATCTCTCCCACTTCCAAGCGGGGGAGAGAAGTCGACGCGCAGAACTTCCCGCCCAAATTTTCACCGCAACTGAAAAGGGAAGGAAGTGGAGTATCGAGTTTGATAGACATGGAAATGGAGAAGCTATTGGAGGACTCCGTGCCCTGCCGTGTGAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCTGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGGTAAATTATATCATGATTGATCATTAG | 717 | 54.95 | MRDWLPLWKRAERRNNLVPKSPEPVTVKQMQSTTGGATGSRSGGGGSGGGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQLLAGNSSDLDSPADQALFEPNPSAGFQRQNSSPAEFLGASGIGEGFYSSYAINSSAALEISPTSKRGREVDAQNFPPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKVNYIMIDH | 238 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 12035286 | 12036811 | - | CmoCh09G013280.1 | Cmo09g01328 | 389330 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo09g01328 | 238 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 198 | 238 | IPR011598 | GO:0046983 | |
| Cmo09g01328 | 238 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 201 | 231 | IPR036638 | GO:0046983 | |
| Cmo09g01328 | 238 | MobiDBLite | consensus disorder prediction | 25 | 41 | - | - | |
| Cmo09g01328 | 238 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 43 | 230 | - | - | |
| Cmo09g01328 | 238 | MobiDBLite | consensus disorder prediction | 15 | 50 | - | - | |
| Cmo09g01328 | 238 | PANTHER | TRANSCRIPTION FACTOR BHLH80 | 43 | 230 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo09g01328 | Cmo-Chr9:12035286 | Cmo14g00440 | Cmo-Chr14:2099332 | 6.10E-23 | dispersed | |
| Cmo09g01328 | Cmo-Chr9:12035286 | Cmo11g00848 | Cmo-Chr11:4312359 | 8.81E-24 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo09g01328 | - | - | csv:101209773 | 276.944 |