Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01339 ATGTCTCGAAGATCGACTAGGTTAGCAGAAAATGCAAATGAAAATTTGAAGAAAACAATAAATAGTGAAGCTGCAACATCATCTGGAACTAAGAGATATGGTGTATCTGGGGGAAGCCATAAATCTTCTAGAGGGAGGCCGAAGTTGAAGCGGGATAGTGAAATCAAGCTAAATGAAGTTACGTTTCCTCCTTTATCTTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACTTGCAGAAAAAGCTCAGTGGTCACAAGAGCAACTGCTTCAAAGAACTTCAAGTCTGAACGGATCAAAAAAGGGGACGGGAGATCAAGGAAGAGGGTGTATTATCAGAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGATGATGTTTATGTGAGAAGGAGAGAAGATGCAAGCTCCGACAATGAAGACCCCGAAGTTGAGGAGTGTAGAGTGTGCTTTAAGTCTGGAAAGGCTATAATGATCGAATGTGATGATTGTCTTGGTGGTTTTCATTTGAAGTGTTTGGAGCCGCCCATGAAGGAAATCCCTGATGGTGATTGGATTTGTGGGTTTTGTGAGGCTACTAAAATGGGCAAAGAGGTTCAATTACCAAAGCCTCCGGCAGGTAAAAAACGGGTTAGGACAATGAGGGAGAAGCTTCTGGCAGGTGACTTGTGGGCTGCCCAAATTGAAAGTTTATGGAAAGAAGTAAATGGCAGCCATCACTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACAGCAGCTGGAAGGCAATCACATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTACGCAGATATTGAGATGGAATCGCTTCTTAGACAGTGTCAAGTCATGAATCCTAAAGACTACTATAATGCCAAGGAAGGGGATGATATATTTTTATGTGAGTATGAATATGACGTTCGTTGGCATAGTTTCAAGCGGTTAGCTGAAATTAATAAAGAAGAGGATGGTGAAGCAGTTGATAGTGACAAAGACTGGAAGTTGGAACAGAATGTAGACTCTGATTCAGATGGTGATGTGGAATATGAAGAAGAGAGAGCAAAAATTTTACAATCTCGAAACTACCCAAGCTCTACCCACGAATTGGCTGCAAATTCAAGGAAAGGACAATTTTGTGGACTACAAAAGATAGGAGCAAAGAAGATCCCCGAGCATATAAGATGCCACAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCATTACCCAAGTCTCTACCTTGTAGGAATAAAGAAATTGAGGAGATAACTACATTTATAGAAAGTGCTATATGTGGTGATCAATGTTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTCCTGTCAGTAATGAGAAACTTGCGGGCTAAAGTTGATGCCGGAAATATAAGGCCTCATTGCTTTGTAGAGGTCAATGGTCTAAAGCTGGCAGCACCAGAAAATATATACAGGGTTATACATGAAGCATTAACTGGGCATAGGGTTCATTGGAAAAAAGCGCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAATAATTGCAAAGGGGATGAACGAACTTGCATTCTTCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCTGTTTTATACAACATTCTTGACTGGCCGACAAAGCCACAAGGAAAGTTAATTGTGATAGGTATTGCAAATACCATGGACCTTCCTGAGAAGTTGCTTCCTCGAATTTCTAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGCCCTTATAATTATCAGCAACTTCAAGAAATAATTTTGAGCCGCCTCGAAGGAATCGATGCATTTGAGAAACAAGCTATTGAATTTGCATCAAGAAAGGTAGCTGCCATTTCAGGAGATGCACGTCGAGCTCTGGAGATATGTAGGCGTGCAGCTGAAATTACAGATTATCGTATAAAGAAGAGTTTGACTTCCAACACTAGTATGAATGCGAAAACACATGTAGGAATAGCTGAGGTGGAAGCAGCGATTCATGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCAGAGCAAGATCTTTTTGACAGCTATGGTGCACGAACTTTATAAAACTGGAATGGGTGAAGCAACCTTTGAAAAGCTTGCCATGACTGTCTCATATCTCTGTACAAGCAATGGAGAGGAATTTCCTGGATATGATGCTCTCTTGAAAGTTGGCTGCAGGCTTGGTGAATGCAGAATTATTTTATGTGAATCAGGATCAAAACACCGATTGCAAAAGTTACAGCTTAATTTTCCAAATGATGACGTCTCCTTTGCATTGAAAGACAGTAAGGATCTACCTTGGTTGGCTAAGTATCTATGA 2394 40.6 MSRRSTRLAENANENLKKTINSEAATSSGTKRYGVSGGSHKSSRGRPKLKRDSEIKLNEVTFPPLSFEQLEGKKRKTCRKSSVVTRATASKNFKSERIKKGDGRSRKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDNEDPEVEECRVCFKSGKAIMIECDDCLGGFHLKCLEPPMKEIPDGDWICGFCEATKMGKEVQLPKPPAGKKRVRTMREKLLAGDLWAAQIESLWKEVNGSHHCKVRWYIIPEETAAGRQSHNLKRELYLTNDYADIEMESLLRQCQVMNPKDYYNAKEGDDIFLCEYEYDVRWHSFKRLAEINKEEDGEAVDSDKDWKLEQNVDSDSDGDVEYEEERAKILQSRNYPSSTHELAANSRKGQFCGLQKIGAKKIPEHIRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESAICGDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGNIRPHCFVEVNGLKLAAPENIYRVIHEALTGHRVHWKKALQLLTKRFSDVNNCKGDERTCILLIDELDLLVTRNQSVLYNILDWPTKPQGKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIILSRLEGIDAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYRIKKSLTSNTSMNAKTHVGIAEVEAAIHEMFQAPHIQVMKSCSKQSKIFLTAMVHELYKTGMGEATFEKLAMTVSYLCTSNGEEFPGYDALLKVGCRLGECRIILCESGSKHRLQKLQLNFPNDDVSFALKDSKDLPWLAKYL 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12131542 12153468 - CmoCh09G013390.1 Cmo09g01339 389341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01339 797 Pfam PHD-finger 147 191 IPR019787 -
Cmo09g01339 797 ProSiteProfiles Zinc finger PHD-type profile. 144 193 IPR019787 -
Cmo09g01339 797 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 95 793 - -
Cmo09g01339 797 Pfam AAA lid domain 620 653 IPR041083 -
Cmo09g01339 797 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 210 IPR013083 -
Cmo09g01339 797 MobiDBLite consensus disorder prediction 1 37 - -
Cmo09g01339 797 MobiDBLite consensus disorder prediction 328 350 - -
Cmo09g01339 797 ProSiteProfiles BAH domain profile. 202 318 IPR001025 GO:0003682
Cmo09g01339 797 MobiDBLite consensus disorder prediction 328 343 - -
Cmo09g01339 797 Gene3D - 596 685 - -
Cmo09g01339 797 SMART AAA_5 443 596 IPR003593 -
Cmo09g01339 797 ProSitePatterns Zinc finger PHD-type signature. 147 190 IPR019786 -
Cmo09g01339 797 SUPERFAMILY FYVE/PHD zinc finger 133 197 IPR011011 -
Cmo09g01339 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 658 IPR027417 -
Cmo09g01339 797 Pfam ATPase family associated with various cellular activities (AAA) 448 593 IPR003959 GO:0005524|GO:0016887
Cmo09g01339 797 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 95 793 IPR020793 -
Cmo09g01339 797 MobiDBLite consensus disorder prediction 1 53 - -
Cmo09g01339 797 Gene3D - 87 333 IPR043151 -
Cmo09g01339 797 SMART BAH_4 178 318 IPR001025 GO:0003682
Cmo09g01339 797 Pfam BAH domain 226 315 IPR001025 GO:0003682
Cmo09g01339 797 CDD AAA 424 599 - -
Cmo09g01339 797 Gene3D - 399 595 IPR027417 -
Cmo09g01339 797 SMART PHD_3 146 191 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01339 Cmo-Chr9:12131542 Cmo20g00379 Cmo-Chr20:1859011 3.44E-31 dispersed
Cmo09g01339 Cmo-Chr9:12131542 Cmo03g01493 Cmo-Chr3:10693669 6.88E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10405 PF00004 AAA 5.60E-19 CL0023 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01339 K02603 - csv:101214082 1384.78