Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00006 ATGAAGGCGAAGGAGTTGTGTTTTAGGTTGCTGTATCGGTGCCGGAGGCGTAAGCTGAAGATGTTGCAGAAGCAGAGATACTCGGAGCGCCAAAGGATTACTTCCGCCCTTCTTGCTACCTCTGCCTATGCTTTACCAGGCCCCCTTCGAATTCCAAGGGTTCCACTTTCTTCACTCCTTCCTTTCACCTCTTCTCCCATACATGTACACTATACCTCTTGCGCTTCTCTTCCCAATCCTCTCCCACTCCTCAATTTCATGTCAATTCGCTGCATTTGTTTTCTGCCTCCGTCTCCTCCCTCTTCCATTCCCTGGAATTCTAATGAACTTGAGGACGCAAATTCTACTTCTAAGTTCACCGTAGAAGCAGGTTATCAAACCCTTTATCGTGTTCTTGAAGCCTGCAGACTCTCCCCCTCGAATTCCAAAACCGCTTCTGAAACGCATGCAAGAATGATTAAATTTGGATATGGAAACTACCCAACTCTCGTCACCTCTCTAGTATCAGCTTATCAACGTGCCGATTGCCTTAATCGGGTCCATCAACTTCTTAATCTACTCTGCTCTAAACATCTTGATTTAGTTGCAATGAACTTATTTATTGACAATTTTATGAAAATAGGGGAATGCAAACTTGCTAAAAGGGTGTTTGATAAAATGCCTTACCGTGATGTGGTAACGTGGAACTCAATCATCGGAGGTTGTGTGAAGAATGCACGGTATGAGGAGGCATTTAAATTCTTTAGGCAGATGCTGAACTCAAATATCCAGCCGGATGGGTTTACATTTGCTTCCGTGTTGAATGCATGTGCGCAGCTCGGAGCTCCAAGTAACACTCAGTGGGTTCATGCTCTGATGACTCAGAAAAAAATTGAGCTTAATTCTATATTGAGTTGTGCACTCATAGACGCCTACTCAAAGTGTGGCAGCATCCAAATTGCAAAGGAAATCTTTAGCAGCGTCCCTCGCAGTAACATCTCAGTTTGGAATGCGATGATCAAAGGGCTTGCGATTCATGGGCTTTCAATGGATGCATTATCGGTATTCTGGATGATGGAGCGTGAGAATGTTCTGCCTGATGCTGTCACCTTTTTGGGTATCTTAACAGCCTGCAACCATGGTGGCTTAATTGAACAGGGTCGCAGGTTTTTTGATTGGATGAAAAACCGTTATTCAATTCAGCCACAGCTCGAACATTATGGAGTCATGGTTGATCTGTATAGCCGAGCTGGGTTTCTCGAGGAGGCCTATTCCATAATCGTAGCAATGCCCATAGAGGCAGATGTTGTGACATGGAGGGCGCTTCTGAGTGGTTGTAGAATTTACAGAAATCAAGAACTCGCAGAAGTTGCTATTGCAAACATGTCTCATCGTGGGAGTGGAGATTACGTGTTGCTATCAAATATCTATTGTTCTCTCAACAGATGGGAGCATGCAGAGAGAGTTAGAGAGAGGATGAAAAGCAATGGAGTTCGCAAGAGTTGCGGAAAAAGCTGGATTGAGTTGGGAGGTTCCATTCAAAGCTTCAAGTCAGGTGACCGATCGCATCCAGAAAGCGATGCAGTGTACAAGGTGGTGTGGCGTTTGATGAAGAGAAGTCGGTCAGAGGGATATATGCCTGTGACAGACTTGGTTCTCATGGATATCTCTGAGGAGGAGAAGGAAGAGAACTTATCATATCACAGCGAAAAGCTGGCATTGGCGTATGCGATCCTGAAAACTGGTCCAGGGGCAAAAATCAGTATATCAAAGAACCTACGGATGTGTGATGATTGTCATAGATGGATAAAACTAGTTTCAACACTGCTGTGCAGAGTTGTAGTAGTGAGAGATCGGATCCGGTTTCATCAATTCGAAGGTGGCATGTGTTCCTGTGGTGATCGTTGGTAG 1890 44.81 MKAKELCFRLLYRCRRRKLKMLQKQRYSERQRITSALLATSAYALPGPLRIPRVPLSSLLPFTSSPIHVHYTSCASLPNPLPLLNFMSIRCICFLPPSPPSSIPWNSNELEDANSTSKFTVEAGYQTLYRVLEACRLSPSNSKTASETHARMIKFGYGNYPTLVTSLVSAYQRADCLNRVHQLLNLLCSKHLDLVAMNLFIDNFMKIGECKLAKRVFDKMPYRDVVTWNSIIGGCVKNARYEEAFKFFRQMLNSNIQPDGFTFASVLNACAQLGAPSNTQWVHALMTQKKIELNSILSCALIDAYSKCGSIQIAKEIFSSVPRSNISVWNAMIKGLAIHGLSMDALSVFWMMERENVLPDAVTFLGILTACNHGGLIEQGRRFFDWMKNRYSIQPQLEHYGVMVDLYSRAGFLEEAYSIIVAMPIEADVVTWRALLSGCRIYRNQELAEVAIANMSHRGSGDYVLLSNIYCSLNRWEHAERVRERMKSNGVRKSCGKSWIELGGSIQSFKSGDRSHPESDAVYKVVWRLMKRSRSEGYMPVTDLVLMDISEEEKEENLSYHSEKLALAYAILKTGPGAKISISKNLRMCDDCHRWIKLVSTLLCRVVVVRDRIRFHQFEGGMCSCGDRW 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 65335 67373 - CmoCh10G000060.1 Cmo10g00006 389352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00006 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Cmo10g00006 629 Pfam DYW family of nucleic acid deaminases 537 629 IPR032867 GO:0008270
Cmo10g00006 629 Pfam PPR repeat 399 423 IPR002885 -
Cmo10g00006 629 Pfam E motif 442 501 IPR046848 -
Cmo10g00006 629 Gene3D Tetratricopeptide repeat domain 325 515 IPR011990 GO:0005515
Cmo10g00006 629 Gene3D Tetratricopeptide repeat domain 114 324 IPR011990 GO:0005515
Cmo10g00006 629 PANTHER OS07G0578800 PROTEIN-RELATED 113 575 IPR045215 GO:0003723|GO:0009451
Cmo10g00006 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Cmo10g00006 629 Pfam PPR repeat family 325 371 IPR002885 -
Cmo10g00006 629 Pfam PPR repeat family 223 271 IPR002885 -
Cmo10g00006 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Cmo10g00006 629 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 113 575 - -
Cmo10g00006 629 TIGRFAM PPR: pentatricopeptide repeat domain 226 259 IPR002885 -
Cmo10g00006 629 TIGRFAM PPR: pentatricopeptide repeat domain 328 361 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00006 - - - cmos:111430093 1227.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00006 Cmo-Chr10:65335 Cmo11g01292 Cmo-Chr11:8763304 3.58E-07 dispersed
Cmo10g00006 Cmo-Chr10:65335 Cmo17g01220 Cmo-Chr17:9726696 1.08E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g11 . . Bda06g00704 . . . . Bma12g01100 . . Cma10g00008 . Car10g00005 . . . . . . . . . . . Cla06g01789 . . . . . . . . . . . . . . . . . . Bpe07g00912 . . . . Cmo10g00006 . . . . . . Cpe18g00944 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012825 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00006 Cmo_Chr10 FPKM 20.105066 22.18432 17.939423 20.823235 16.497683 14.01314 16.639479 11.998476 9.374918 11.129094