Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00007 ATGGATCCGGAAGCCCTCTCAGCAACTTTGTTCAAATGGGATCCTCGAGGAGTGGTGGGGGGCGGCAGCGGTGCATCCCTCCCAGCACCACTACCCCCCTACTCGCTGCGCCCCAGGGAGTTGGGACTAGGAGGCCTGGAGGAGTTGTTCCAGGCTTACGGTATCAGGTACTACACCGCCGCTAAAATTGCGGAACTCGGATTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTGGAGGACATGATGAACAGCCTCTCTCACATTTTCCGTTGGGAGCTTCTGGTGGGTGAGAGGTACGGAATTAAGGCGGCTATAAGAGCCGAGCGCAGACGTCTAGATGACGAGATCGACCCCTCCAGGCGCCGTCACCTCTTGTCCAACGACACCACCACCAACGTCGTCCTCGATGCCCTCTCTCAGGAAGGGCTATCGGAGGAGCCGGTGCAGCAGGAGAAGGAGGTGGTGGGAAGCGGAGGCGGAGGAGGAGCGTGGGAGGCAGTTGCAGCAGCTGAGATGAGGAAGAAGCAGCGGAGGAGAAACGTATCGAAGAAGAAGCAGGTGATAGTGATGGAGGAGGATAATGAGGAAACCGAGGGAGGTGGGGAGGAGGAGGAGAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACCGAACCAGGGGAGGTTGCACGGGGAAAGAAGAACGGCCTCGACTATCTCTTCCACCTCTATGAGCAGTGTCGTCAATTTTTGATCCAGGTCCAGAACATCGCCAAGGAACGAGGAGAAAAATGCCCCAATAAGGTGACGAACCAGGTGTTTAGATACGCGAAGAAGGCGGGAGCAAGTTACATAAACAAGCCCAAAATGAGACACTACGTGCACTGCTATGCGCTGCATTGTCTGGACGAGGAAGCGTCGAATTCATTGAGGAGGGTTTTCAAAGAAAGGGGCGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCTCTGGTAGCCATAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACACCTCGCCATCTGGTACGTGCCTACCAAACTCCGCCAACTCTGCCACGCCGAGCGCAACAGTTCCACAGCCTCCACCTCCGCTGCCGCCGCTCTCTTGCCTTTTTAA 1161 55.81 MDPEALSATLFKWDPRGVVGGGSGASLPAPLPPYSLRPRELGLGGLEELFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSLSHIFRWELLVGERYGIKAAIRAERRRLDDEIDPSRRRHLLSNDTTTNVVLDALSQEGLSEEPVQQEKEVVGSGGGGGAWEAVAAAEMRKKQRRRNVSKKKQVIVMEEDNEETEGGGEEEENMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRQFLIQVQNIAKERGEKCPNKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNSLRRVFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPHLAIWYVPTKLRQLCHAERNSSTASTSAAAALLPF 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 69447 71489 + CmoCh10G000070.1 Cmo10g00007 389353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00007 386 MobiDBLite consensus disorder prediction 194 215 - -
Cmo10g00007 386 Gene3D Protein LEAFY 212 380 IPR038276 -
Cmo10g00007 386 PANTHER PROTEIN LEAFY 1 385 IPR002910 GO:0003677|GO:0006355
Cmo10g00007 386 Pfam Floricaula / Leafy protein SAM domain 43 118 IPR035079 -
Cmo10g00007 386 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 211 374 IPR035209 GO:0003677
Cmo10g00007 386 PANTHER PROTEIN LEAFY 1 385 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00007 Cmo11g00003 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00007 Cmo-Chr10:69447 Cmo11g00003 Cmo-Chr11:11592 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10406 PF17538 C_LFY_FLO 2.20E-107 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00007 - - cmax:111484867 662.144