Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00008 ATGCAGTGGGTATATCCGTTCAATGGTTGGCGTTTTTCCACGGGGACAGAAGTTTACGCGAGAGTGACTGTCGGCTTAGTTGTGCCCGGGACCTTTTTCCATTCTGGAGAATATGATAGGATGGGGTGGCTGGAATGTGAAGTCGAACATAACAAAATTATGGATGGTGCAAAGTCAGTGACTCCCAAAAAACTAAAAGTGGATCCGAACCGAGGGAAGAGGCCCTTCTCTTCCGATGAATTGGAGGAAGAAAACCCGTTCCCGATCTACTCAGCTAGATCTCAACATGACACGTCGGCCATGGTTTCTGCGTTAGCTCAAGTGATAACGAGTGGGAGTGGGAGTAGCAGAAGCCCAGTAGAAGCAGATTACTGGCCGCAATCGCAGCAAGCAGCAGCAGATGAAGAACAAGGTGGTGGAAGCAGGACGGGGATGGTGTCAAGAGAGAGGCATTATCGAGGAGTAAGGCAGAGACCGTGGGGAAAATGGGCAGCTGAGATTCGTGATCCGAAAAAGGCAGCAAGAGTGTGGCTGGGCACCTTCGACACTGCTGAGGCTGCCGCACTTGCTTACGATGAAGCTGCCCTCAGATTCAAAGGCACCAAAGCCAAGCTCAACTTCCCTGAGAGACTCACTACCCCATGCCCTCCGCCCCCCTATGCCTATCATCACCATCACAATAACCACAACCTATAG 696 51.29 MQWVYPFNGWRFSTGTEVYARVTVGLVVPGTFFHSGEYDRMGWLECEVEHNKIMDGAKSVTPKKLKVDPNRGKRPFSSDELEEENPFPIYSARSQHDTSAMVSALAQVITSGSGSSRSPVEADYWPQSQQAAADEEQGGGSRTGMVSRERHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPCPPPPYAYHHHHNNHNL 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 72992 74712 - CmoCh10G000080.1 Cmo10g00008 389354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00008 231 Gene3D AP2/ERF domain 150 210 IPR036955 GO:0003700|GO:0006355
Cmo10g00008 231 PRINTS Ethylene responsive element binding protein signature 174 190 IPR001471 GO:0003700|GO:0006355
Cmo10g00008 231 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Cmo10g00008 231 SMART rav1_2 151 214 IPR001471 GO:0003700|GO:0006355
Cmo10g00008 231 MobiDBLite consensus disorder prediction 63 81 - -
Cmo10g00008 231 Pfam AP2 domain 151 200 IPR001471 GO:0003700|GO:0006355
Cmo10g00008 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF114 72 215 - -
Cmo10g00008 231 PANTHER DNA-BINDING DOMAIN 72 215 IPR044808 GO:0003700|GO:0009873
Cmo10g00008 231 MobiDBLite consensus disorder prediction 63 82 - -
Cmo10g00008 231 MobiDBLite consensus disorder prediction 126 147 - -
Cmo10g00008 231 ProSiteProfiles AP2/ERF domain profile. 151 208 IPR001471 GO:0003700|GO:0006355
Cmo10g00008 231 CDD AP2 151 209 IPR001471 GO:0003700|GO:0006355
Cmo10g00008 231 SUPERFAMILY DNA-binding domain 151 209 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00008 Cmo-Chr10:72992 Cmo03g01057 Cmo-Chr3:7875428 5.88E-32 dispersed
Cmo10g00008 Cmo-Chr10:72992 Cmo08g00027 Cmo-Chr8:137492 4.08E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10407 PF00847 AP2 5.30E-15 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00008 - - ini:109164738 179.489