Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00009 ATGGGCAACTGCTTTTCCGACGACGCCGTTGGCCGCTCTGCCGCCGGTGCCACTCCCTTCTCCCAAAATAATACTTCCAACACCGCCGTAGATTGTTTCTTGTTGTCTCGGGGCTACCGTGGCCTCTATTCCCAGATCGAGCTCTCATTCTCTGCATCTAACTTGCGGGACCGTGATGTTTTCTCCCAGGTCGGTATCTCTTTCATGGACGTCGAAACACTATATATCTTGATAATGATTTTCATTGTCAATACCCGGCCATCTATTGATACCATTGTTTCCCCAAAAATCTCCTGTCGGAAATTTTATTTTCCTCAGAGTGATCCCATGGTGGTAATCTACACAAAAGGAAGAGACGGAAAACTAGAAGAGCTTGACCGCACAGAAGTAATTCAAAATTCATTAAACCCAAAATGGATCCATAAGCTAAAGATTACCTATCTATTTGAGGTTGTGCAAACTTTGGTGTTTTTTGTATATGACGTCGATACTCAATATCAAAATCTAGGAGTAAAGCCACATAATAGTAGATCCAGTATTGCCAATACTCCCAAGACTGAAGGATTTGTTACTTATGTTCCTCGATGCCCAACGCCAATTGATCTCTATGTTTACGTGATGTCGGTTTTTATTCTAACAGATTTTTATAAAATCGCTATAGTGACCAAATCAGAAAGGTCACTTACCTTGGATCTAGTTTATAGAGAAGAATCAACCAGCTCTACTCATACACACCACCGTGGAAAATTTACTGTTCATGCTGAGGAGTGTGTTAGCTCAAAGACCACCACAGAGATGATATTGAGGTGTTCAGACTTGGAACACAAGGATCTCTTCTCACGAATTGACCCTTTTCTGGTTATTTCAAAAACTGTTGAGAGTAAGAGCTCAATTCCAGTTTGCAAAACTGAAGTCATAAAGAATGATTTGAATCCCACATGGAAGCCCGTATTCTTGAATATGCAACAAGTTGGAAGCAAGGACAGCCCCTTAATAATAGAGTGTTACAACTTCAACAACAACGGGAAGCATGAATTGATTGGAAAAGTTCAAAAATCACTTGTGGAGTTGGAGAAGCTTTCTTTTAGTGGGGAGGGAGAAAATCTGTTCTTACTTCCTTCTGCTGGACATGATTACCATATCAAAGTATTAAAAAGCCAGCTATTTGTGGACAAATTCTCTGAGAGCGTTCAACAAACGTTTCTTGATTACATAGCTGGTGGCTATGAAATGAACTTCATGGTGGCTGTTGATTTCACAGCTTCAAATGGAAATCCCCGCCTTCCTGATTCCTTGCATTTCATTGATCCTTCAGGACGGCCAAATTCATACCAGCGAGCAATCATAGAAGTTGGAGAGGTGTTGCAGTTTTATGACTCAGATAAACGCTTTCCTGCTTGGGGATTTGGAGCACGACCAATTGATGGTCCAGTATCTCATTGTTTCAACCTAAATGGAAGTAGTCACTACTGCGAGGTTGAAGGAACTCAAGGAATTTTGATGGCATATACAAGTGCGCTCCATAATGTATCTCTTGCAGGACCAACTCTTTTTGGGCCTGTGGTTAATAATGCTGCATTAATTGCCAGTCAGTCTCTCGCAAGTGGTGGGCGGAAGTACTTTGTTTTGCTCATAATCACTGATGGAGTGGTAACAGATCTCCAAGAAACTAAAGATGCTCTTGTGAAGGCATCTGATCTGCCATTGTCCATTCTCATTGTTGGAGTGGGTGGAGCTGACTTTAAAGAAATGGAGGTTTTAGATGCGGATAAGGGAGAGAGACTTGAAAGTACAACTGGACGTGTTGCCTCACGAGATATAGTCCAATTTGTTCCATTTCGGGATGTACAGGGTGGAGGGATTTCTGTTGTTCAAGAACTGCTAGCAGAAATACCTCATCAGTTTCTGACCTATATTCGAAGCAGAGATGTTCAACCAAATTCATGA 1947 41.65 MGNCFSDDAVGRSAAGATPFSQNNTSNTAVDCFLLSRGYRGLYSQIELSFSASNLRDRDVFSQVGISFMDVETLYILIMIFIVNTRPSIDTIVSPKISCRKFYFPQSDPMVVIYTKGRDGKLEELDRTEVIQNSLNPKWIHKLKITYLFEVVQTLVFFVYDVDTQYQNLGVKPHNSRSSIANTPKTEGFVTYVPRCPTPIDLYVYVMSVFILTDFYKIAIVTKSERSLTLDLVYREESTSSTHTHHRGKFTVHAEECVSSKTTTEMILRCSDLEHKDLFSRIDPFLVISKTVESKSSIPVCKTEVIKNDLNPTWKPVFLNMQQVGSKDSPLIIECYNFNNNGKHELIGKVQKSLVELEKLSFSGEGENLFLLPSAGHDYHIKVLKSQLFVDKFSESVQQTFLDYIAGGYEMNFMVAVDFTASNGNPRLPDSLHFIDPSGRPNSYQRAIIEVGEVLQFYDSDKRFPAWGFGARPIDGPVSHCFNLNGSSHYCEVEGTQGILMAYTSALHNVSLAGPTLFGPVVNNAALIASQSLASGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESTTGRVASRDIVQFVPFRDVQGGGISVVQELLAEIPHQFLTYIRSRDVQPNS 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 74859 82054 - CmoCh10G000090.1 Cmo10g00009 389355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00009 648 CDD vWA_copine_like 381 635 IPR010734 -
Cmo10g00009 648 Gene3D C2 domain 49 178 IPR035892 -
Cmo10g00009 648 Pfam Copine 431 646 IPR010734 -
Cmo10g00009 648 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 105 170 - -
Cmo10g00009 648 CDD C2B_Copine 265 362 IPR037768 -
Cmo10g00009 648 ProSiteProfiles VWFA domain profile. 412 631 IPR002035 -
Cmo10g00009 648 Pfam C2 domain 266 358 IPR000008 -
Cmo10g00009 648 Pfam C2 domain 105 164 IPR000008 -
Cmo10g00009 648 SMART C2_3c 267 369 IPR000008 -
Cmo10g00009 648 SMART C2_3c 77 189 IPR000008 -
Cmo10g00009 648 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 63 - -
Cmo10g00009 648 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 267 357 IPR035892 -
Cmo10g00009 648 ProSiteProfiles C2 domain profile. 70 190 IPR000008 -
Cmo10g00009 648 ProSiteProfiles C2 domain profile. 246 370 IPR000008 -
Cmo10g00009 648 PANTHER COPINE 219 647 IPR045052 GO:0005544
Cmo10g00009 648 PANTHER COPINE 1 63 IPR045052 GO:0005544
Cmo10g00009 648 SMART VWA_4 410 607 IPR002035 -
Cmo10g00009 648 PANTHER COPINE 105 170 IPR045052 GO:0005544
Cmo10g00009 648 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 104 166 IPR035892 -
Cmo10g00009 648 Gene3D C2 domain 264 386 IPR035892 -
Cmo10g00009 648 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 219 647 - -
Cmo10g00009 648 SUPERFAMILY vWA-like 411 593 IPR036465 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00009 - - - csv:101215724 957.977
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00009 Cmo11g00005 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00775 Cmo-Chr5:4409439 Cmo10g00009 Cmo-Chr10:74859 0 dispersed
Cmo10g00009 Cmo-Chr10:74859 Cmo15g00380 Cmo-Chr15:1758168 2.89E-23 dispersed
Cmo10g00009 Cmo-Chr10:74859 Cmo11g00005 Cmo-Chr11:24044 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g18 . Blo16g00293 . . . Bpe13g00181 Bma06g00290 . . . Cma10g00011 Cma11g00006 Car10g00008 Car11g00005 . . Cpe04g01639 . . . . . . . . . . . . . . . . Cone13ag0266 Cone19ag0250 . . . . . . Bda11g01570 . . . . . . Cmo10g00009 Cmo11g00005 . . . . . Cpe18g00942 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000909 3 5 3 2 2 2 3 3 2 2 2 2 3 1 2 3 2 3 3 2 2 2 3 2 2 2 1 4 6 9 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00009 Cmo_Chr10 FPKM 0.0 0.373186 2.827654 2.775752 0.221435 0.443285 0.12999 0.0 0.0 0.0