Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00015 ATGGCCTCCTCCGAGGTTTCCATCAACCCCAATTCCGCCTCCGTTCCCTTCAACGACCATGCCGATTCTACCAAACTCACCTCCGATCCACCTAACGCTCTCTCTGCCAGGGATGCTGATTTCGCCCTCTTCACCGAGCTTTGGAATGCTTGTGCTGGTCCTCTCGTTTCTGTTCCTCGCGAAAACGACCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCCACCAGTCAAGTGGCGGACCAACAGATGCCAGTTTATGACCTTCCATCCAAGATCCTCTGCCGCGTTATTAATGTGCATTTAAAGGCCGAGCCAGACACCGATGAGGTATTTGCACAAATAACTTTGGTTCCAGAGGCAAATCAAGATGAGCATGCTGTGGACAAGGAACCCCCGCCTCCTCCACCGCGGAGATTTCACGTGCATTCTTTTTGCAAGACTCTGACTGCCTCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGTTGGTACATCTGTATTTCCTGGACAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGTGTTGGTGTTAGGCGTGCCATGAGACAACATGGTAACGTCCCTTCATCGGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCATGGCATGCTATTTCTACAGGCACAATGTTCACTGTCTACTACAAGCCTAGGACTAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGAGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAGCAGAGATTCACTGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGTCTGAAGGTGAGATGGGATGAGACTTCTACTATTTCTCGTCCTGAGAAAGTCTCACCATGGAAAATTGAGCCTGCTCTTGCTCCTCCTGCACTGAACCCTCTTCCTATGACTAGACCTAAAAGGCCTCGATCAAACATGGTGCCTACATCCCCTGATTCCTCTGTTCTTACTCGAGAAGGCTCATCAAGAGTGACTGTAGACCCTTCACCAGTTAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTAAGGGGCAATTTTATCGATGGCAATGATCCTGATGCTGCTGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAAATTGATGTGGTTTCTACATCTAAGAAACATGGAGCAGATTGCTGGATAACTCCAGGAAGGAGTGAGCCAACCTACGCAGATCTTCTGTCAGGTTTTGGAACTAATCTTGATTCATCTCATGGTGTCCGAGCTGGCATGGGAGATCCAGCAGTAGTAACTGCTAATTCAATCAGAAAGCATGTCATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGCTCATGGTCTGTCTTGCCTTCTGGTCTCTCGCTCAACCTTGTGGACTCTAGTCAGAAGGGCCATATTCAGGCTGGTGACTTATCTTATCAAGTGAGAGGAAATGCTACCTTCAATGGATTTGGTGATCATTCCGTTGCCCATTGTCATAGAACAGAACAGCCTCATGGAAACTGGTTGATGGCTCCACTTTCGTCTCATTTTGATTATCCAGTTCAGTCAACTGAACTGATGTCGATGCCTATGGTATTTCAGAATCAAGATATAATGAAACCCAAAGATGGGAATTGTAAGCTTTTTGGCATCTCTCTCATTAAGAATCCTGCCATTCCAGACTCTGCAGGATTGAATAGAAATATGAATGGGGCAGATGTTACGCATCTGAATATACATCAAATCCATTCAAACGAGTCTGACCTCAAGTCTGAACCATCTAGGGGTTCAATGTTGGCTGATAAATCCCTTGCCATTAATGATGCCGATAAGTTGCAGCAAACATGCACGCAAAACTTGAAGGATGCACACTGCAAATCACAGGGTACTTCAGCAAGGAGTTGTACAAAGGTCCAGAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAGGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAGTTTGGTGGCGAGCTGCTGGCTCCCAAAAAGAATTGGCTTATTGTATATACGGATGATGAAGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCGAGGATCTCTAAATTTGGAAGGCGATGAAAATCCATCTGTAGAAGGGAAAGAAGCAAAAGAGATTGAAGGTCAGGCAGTACCTTCGATATCCGCACCCGAGAGTTTTTGGTGCGGTACTGAAGGAGTCGAGCAGAGTAATGCAGCGAGGCCGGAAGGTTGCGGCCTTTAG 2550 46.12 MASSEVSINPNSASVPFNDHADSTKLTSDPPNALSARDADFALFTELWNACAGPLVSVPRENDRVFYFPQGHIEQVEASTSQVADQQMPVYDLPSKILCRVINVHLKAEPDTDEVFAQITLVPEANQDEHAVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLVGTSVFPGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVPTSPDSSVLTREGSSRVTVDPSPVSAFTRVLQGQEFSTLRGNFIDGNDPDAAEKSVMWPPSLDDEKIDVVSTSKKHGADCWITPGRSEPTYADLLSGFGTNLDSSHGVRAGMGDPAVVTANSIRKHVMDQDGKFNFLGGSSWSVLPSGLSLNLVDSSQKGHIQAGDLSYQVRGNATFNGFGDHSVAHCHRTEQPHGNWLMAPLSSHFDYPVQSTELMSMPMVFQNQDIMKPKDGNCKLFGISLIKNPAIPDSAGLNRNMNGADVTHLNIHQIHSNESDLKSEPSRGSMLADKSLAINDADKLQQTCTQNLKDAHCKSQGTSARSCTKVQKQGIALGRSVDLSRFNNYDELVAELDQLFEFGGELLAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNRGSLNLEGDENPSVEGKEAKEIEGQAVPSISAPESFWCGTEGVEQSNAARPEGCGL 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 102271 107657 + CmoCh10G000150.1 Cmo10g00015 389361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00015 849 SUPERFAMILY CAD & PB1 domains 704 781 - -
Cmo10g00015 849 Gene3D - 700 793 - -
Cmo10g00015 849 Gene3D - 291 361 - -
Cmo10g00015 849 ProSiteProfiles PB1 domain profile. 704 788 IPR000270 GO:0005515
Cmo10g00015 849 MobiDBLite consensus disorder prediction 377 402 - -
Cmo10g00015 849 Pfam B3 DNA binding domain 150 229 IPR003340 GO:0003677
Cmo10g00015 849 ProSiteProfiles B3 DNA-binding domain profile. 190 230 IPR003340 GO:0003677
Cmo10g00015 849 Gene3D - 146 182 IPR015300 -
Cmo10g00015 849 Gene3D - 183 230 IPR015300 -
Cmo10g00015 849 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 31 811 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo10g00015 849 SMART B3_2 149 230 IPR003340 GO:0003677
Cmo10g00015 849 MobiDBLite consensus disorder prediction 362 402 - -
Cmo10g00015 849 MobiDBLite consensus disorder prediction 1 31 - -
Cmo10g00015 849 CDD B3_DNA 147 228 IPR003340 GO:0003677
Cmo10g00015 849 Pfam AUX/IAA family 691 786 IPR033389 -
Cmo10g00015 849 Pfam Auxin response factor 254 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo10g00015 849 SUPERFAMILY DNA-binding pseudobarrel domain 146 257 IPR015300 -
Cmo10g00015 849 PANTHER AUXIN RESPONSE FACTOR 2 31 811 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02889 Cmo-Chr4:20561953 Cmo10g00015 Cmo-Chr10:102271 0 dispersed
Cmo10g00015 Cmo-Chr10:102271 Cmo15g01361 Cmo-Chr15:9303666 6.31E-31 dispersed
Cmo20g00509 Cmo-Chr20:2433984 Cmo10g00015 Cmo-Chr10:102271 4.93E-128 dispersed
Cmo10g00015 Cmo-Chr10:102271 Cmo16g00585 Cmo-Chr16:2822610 8.98E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10408 PF02309 AUX_IAA 2.10E-11 CL0072 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00015 - - cmos:111429821 1665.97