Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00017 ATGTTTTCCTCCTTCACAAAAGCTGGTGCCTATTCGTGCAGCTATGTGCATGGATCTCCATTGTTAGAAATCTCAAGTGCATTTGAATCCCGAGAAAGGGCTGAAAAATTAGCCGCCGCTATTGGAAGGATCTTGCTATTGGACCTTGTCATCAGAAATGAAGACCGGCTCCCTTGTCGTCTTCTTCGTTGGCGTGGAAATTCTGCAAATTTGCTTTTGGCTGATAGAATGGCGTGTGCAAATTTGAATGCATTTGAGGAAGCCTTTGATTCTGCCATTAAACGATACAGACCAAAAGTCATTTCAACGCTTCAAAAAGAAAGAAGGGGAACTTCAATGGACAATCGACCAAGTTCTAGTTCAGGGTTGGTTTCAGAGACCTCTGAACTTTCTGATAATGTTGAATCCCCAAAATCTAGTAACCTAAGTGTTAAAAGTCAAATATCAGATGAAGTAATGCTCTGTGATTTTAACATTGTGGCTATTGACTCTGGTGTTCCTCGTCGTCCTCCTGCTGGAAAACGTGCTAATGACCAGTCAATTTACCCAAAATTAGTTGAGTTGTTACTCAACAGTTCCGAGTTCTCCTCTAATCTATTGCATGACATTACGGGAGGGAAATTAGGGTTCCCTTCATTAGCTGATGCCAACTCAACTTCTGGCATACAGCTTACAGATATGAGTTCTATTGTCCATGAATTTCGGTATGGGTTTCGTGCTGCTCTTAGGGACTTGCAAGGATTTCACATATTTTTGCTTACCCTTCACCAAAAGTTAGACAACTCATTACGAGCATTCATGAATATCATAAATAAATTTCCCTTGGGGGAATCCGATAAAGAGGACTCGGGGGTTCCCGAGTCCCATTTGCAGGCTTCTACCACTATTCATTGTTTATCTCCACGGGGTAAGGAACGAGTCTCCAGTGACGGTAATATAGATGTTACAGAGTCAGCTCCAAGATCGTCATCGTCAGGAAATAGAGAAAGCTCGGACTTATCTTCTCCCTTGTCACGAGATAGCTCACAAGGAAAGTTACACAGGGGAGGTGCAGAGCCCATTCATAGCCTTCGTTTGACTGCAAAGCTTCGAGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCAAATAAAGAATTGGATATGTGGAATGAAGTGTTGAAGAATGAAGCTGTTAAACTCTGCCAGGAGAATAAATTTAATACTGGGTTTTTTGAGGGCAGCGATAGTCATGGAGTTGTGGATGCTTATGAATTAAAGGTGAGACTTGAGCACATTCTTGAAAGGATTGCACTGATATCTGAGGCTGCAAATACAGAAAGGCCTTCTTCAGTTACACCTGCCTTGTTTATAGGTGGTGCCTTGGCTGCAAGATCTGTTTACACTCTTCAGCATCTAGGAGTTACTCATATTTTATGTCTCTGCTCCAATGAAATTGGGCAGTCAGATTCTCAGTTTCCTGATCTATTTGAATACAAGAACTTTTCAATAAGTGACAATGAAGACTCAAACATCAGCAGTATCTTTGAGGAAGCTTCTGATTTTGTTGATGACGTTGAAAGAAAGGGTGGGAAGGTCCTGGTTCACTGTTTTGAAGGGAAAAGCAGAAGTGCCACATTAGTTCTTGCTTACTTGATGCTCAGAAAGAAATACACACTGCTAAAAGCATGGAATGCTTTGAAACGAGTTCACCGTCGAGCTCAGCCTAATGATGGGTTTGCTAAAACTTTGTTAGAATTAGATCGAAGAATACATGGAAAAGTTTCCATGGAGTGGCAGTCACGAAAACCAACTATGAAAGTCTGCCCAATTTGTGGGAAAAATGCTGGACTGAGCAGTAGCTCACTGAAACTTCATCTGCAAAAATCACACAAGAAGCTATCATCTGGGAGCGTAGACAGTGCAATGACCATGGAAATACAGAAAGCACTAACAGCTCTGAAAATCAGTCGTGGCGGAAGCGTGAGCCCAACCCAGAGGCAATCTCTTCTGATCTTAGATGAATAG 2007 41.9 MFSSFTKAGAYSCSYVHGSPLLEISSAFESRERAEKLAAAIGRILLLDLVIRNEDRLPCRLLRWRGNSANLLLADRMACANLNAFEEAFDSAIKRYRPKVISTLQKERRGTSMDNRPSSSSGLVSETSELSDNVESPKSSNLSVKSQISDEVMLCDFNIVAIDSGVPRRPPAGKRANDQSIYPKLVELLLNSSEFSSNLLHDITGGKLGFPSLADANSTSGIQLTDMSSIVHEFRYGFRAALRDLQGFHIFLLTLHQKLDNSLRAFMNIINKFPLGESDKEDSGVPESHLQASTTIHCLSPRGKERVSSDGNIDVTESAPRSSSSGNRESSDLSSPLSRDSSQGKLHRGGAEPIHSLRLTAKLRDFHKFAKVDAESNKELDMWNEVLKNEAVKLCQENKFNTGFFEGSDSHGVVDAYELKVRLEHILERIALISEAANTERPSSVTPALFIGGALAARSVYTLQHLGVTHILCLCSNEIGQSDSQFPDLFEYKNFSISDNEDSNISSIFEEASDFVDDVERKGGKVLVHCFEGKSRSATLVLAYLMLRKKYTLLKAWNALKRVHRRAQPNDGFAKTLLELDRRIHGKVSMEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQRQSLLILDE 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 117082 120158 - CmoCh10G000170.1 Cmo10g00017 389363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00017 668 MobiDBLite consensus disorder prediction 312 342 - -
Cmo10g00017 668 MobiDBLite consensus disorder prediction 104 142 - -
Cmo10g00017 668 MobiDBLite consensus disorder prediction 278 351 - -
Cmo10g00017 668 Gene3D - 19 271 IPR036940 GO:0016301
Cmo10g00017 668 Pfam Actin-fragmin kinase, catalytic 14 166 IPR015275 -
Cmo10g00017 668 ProSiteProfiles Dual specificity protein phosphatase domain profile. 441 586 IPR020422 GO:0006470|GO:0008138
Cmo10g00017 668 Pfam Dual specificity phosphatase, catalytic domain 457 582 IPR000340 GO:0008138|GO:0016311
Cmo10g00017 668 MobiDBLite consensus disorder prediction 114 142 - -
Cmo10g00017 668 SUPERFAMILY Protein kinase-like (PK-like) 13 179 IPR011009 -
Cmo10g00017 668 SMART dsp_5 441 583 IPR020422 GO:0006470|GO:0008138
Cmo10g00017 668 CDD DSP 442 579 - -
Cmo10g00017 668 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 12 667 - -
Cmo10g00017 668 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 441 585 IPR029021 -
Cmo10g00017 668 ProSitePatterns Tyrosine specific protein phosphatases active site. 528 538 IPR016130 GO:0016311|GO:0016791
Cmo10g00017 668 Gene3D Protein tyrosine phosphatase superfamily 418 587 IPR029021 -
Cmo10g00017 668 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 506 562 IPR000387 GO:0016311|GO:0016791
Cmo10g00017 668 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 12 667 IPR035010 GO:0004721|GO:0009737|GO:0043622
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01140 Cmo-Chr8:7275567 Cmo10g00017 Cmo-Chr10:117082 2.23E-20 dispersed
Cmo10g00017 Cmo-Chr10:117082 Cmo18g00757 Cmo-Chr18:9203880 3.77E-20 dispersed
Cmo10g00017 Cmo-Chr10:117082 Cmo04g00237 Cmo-Chr4:1182084 2.81E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00017 K14165 - csv:101220184 1149.81