Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00026 ATGAACCCATGTAGCTGGGAGTTAGAAGAAGCGCCACAAATCCCCCACTTCCACCACCTTCTTCCACCTCAAATCCAATCTTCCTCGGCTCAGCAAACTGCCCACCACCACCACCTCCCGCCTCGCATATTACCCACCACCACCAACTCATTGCCTTCTTCCCACTCTCTCTCTCCGTCCAAGGAGGACCCAAATGAAAGAGGGGGCGACGGCAAGAGGAGAGGCTACAAGCGTGCAAAAGCAGGAGGAGGCCGCAAGAAGCTCAAAACCCAAGACCACCCTCAAGTTTCTCCACCACCAGGGTACATCCACGTAAGAGCCAGGAGGGGTCAGGCCACAGACCGCCACAGCCTTGCAGAAAGGGTGAGAAGACAGAAAATCAGCCAAAGGATGAAGGTTCTGCAGACGCTTGTTCCAGGCTGCCACAAGGTAACTGGGAAGGCCCTTATGCTCGACGAAATTATCAACTATGTTCAGTCCCTGCAAAGTCAAATTGAGCTTCTGTCCATGGAGCTTGCTTCTGTTCACCCCATCCGCTATGACTTTGGAATGGATAATCCAGAGGTATTCATCGGTACGCCAGTCACACAGGTATTGAACGGGAGTGGCATGGTGTCACGTTCAGAGCAGGCAGAATTGGCATATAATATGGCGTCATGCAACACATTTCAGGCCACAGGCGGTGGCGGTGGTGACAGCCCAATCTTAACGGCTGAAAACGGCAGCTTTATCCCAGTGGACATGAATCCATCTCAAGTTTTCCTGGATTATGGGAATGCTTCTCTGCAACATCTGTCATGA 801 52.06 MNPCSWELEEAPQIPHFHHLLPPQIQSSSAQQTAHHHHLPPRILPTTTNSLPSSHSLSPSKEDPNERGGDGKRRGYKRAKAGGGRKKLKTQDHPQVSPPPGYIHVRARRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIELLSMELASVHPIRYDFGMDNPEVFIGTPVTQVLNGSGMVSRSEQAELAYNMASCNTFQATGGGGGDSPILTAENGSFIPVDMNPSQVFLDYGNASLQHLS 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 144859 146093 + CmoCh10G000260.1 Cmo10g00026 389372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00026 266 CDD bHLH_AtBPE_like 101 185 - -
Cmo10g00026 266 Gene3D - 108 178 IPR036638 GO:0046983
Cmo10g00026 266 SMART finulus 117 167 IPR011598 GO:0046983
Cmo10g00026 266 MobiDBLite consensus disorder prediction 60 77 - -
Cmo10g00026 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 161 IPR011598 GO:0046983
Cmo10g00026 266 MobiDBLite consensus disorder prediction 26 102 - -
Cmo10g00026 266 MobiDBLite consensus disorder prediction 43 59 - -
Cmo10g00026 266 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 54 221 IPR024097 GO:0006355
Cmo10g00026 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 109 176 IPR036638 GO:0046983
Cmo10g00026 266 Pfam Helix-loop-helix DNA-binding domain 115 162 IPR011598 GO:0046983
Cmo10g00026 266 PANTHER BHLH-TRANSCRIPTION FACTOR 54 221 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00026 Cmo13g00858 CCT
Cmo10g00026 Cmo18g00237 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00026 Cmo-Chr10:144859 Cmo08g00241 Cmo-Chr8:1463780 5.51E-44 dispersed
Cmo10g00026 Cmo-Chr10:144859 Cmo13g00858 Cmo-Chr13:7861441 3.97E-44 wgd
Cmo10g00026 Cmo-Chr10:144859 Cmo18g00237 Cmo-Chr18:1559926 1.64E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10409 PF00010 HLH 8.10E-07 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00026 - - cmos:111429828 472.241