Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00043 ATGCCCAGGAGGCGCCTTCGACTGAGCTGTTCTTCCGATGAAGACCACGAAAACGAAGACTTCGAACATGATCCTCAGTGCCCAGATTCCTCCACCACCTCTCTTCAGCCTCCCATTATCGACAATCTTAACTCTCATTTTAATCCCAACGTTTCTGAGCCCGTCCAACTTTCCGACGACGACGACGAACAAGATTTTATCGATGTCTCCGAACATCTCTCGCCTCCCTCTCCGGACTCTGATCATTCTCTCCGTCACTCGCCTGAGCCGAATCCTCATGTCGCTTCCCGCGAGCCGTCGTGTCCTGTGAGTGAGTTCCTTCGGGGACTTGGTTTAAGCTTGAAGAGAGAGTGGCTGGATGCCTGTATCCGTGCCCATCATGGGTCTGTACCGGGTTTTTTGAGCCTCAACCCAGCAGAGAAAGGAAAGCTGTGTTTTGAGCAGTTTTTGGTTTCTGATATGAATTACGCGGGTGCTGGTGTCCTGCCCGAAAATGTTGATTCTATGCATCTCGTTGATCTCCCTGGTCCATACGTACTGCAGGTTATTTTTGCCGCTAAGCAAAATTTCAGATATTATAAGAATGACCTACGGCTTGAGGTAGGCGCAATTGTAGAGTCCTTGCTGAGTTGTTTTCCATGTCAGGTCGATGAGATAGTTAACATCAGTTGTCCTCTAAAGGGTAGATATCAGACTGCCCCTGCGAGTATTAAGAGGTGCCTTAAGCTGTCTATGACGGATGGTGTTCAGCGAGTTTTTGGCATGGAATACAGGCCTATTAAGGGTCTTGAAGTTTTAGCACCTGCTGGGTTGAAGGTAGTGATCTGCAATGTAAGTGTACGGCGTGGGGTTCTAATGCTAGTTCCTGAAGCTTTTGAGGTTCTAGGAGGTCTGGTTGAAGAACTGGAGTCAGCTCGGCAGCGGCTGGTTGATGAAGTGAACAAGCCACCTAGAGGAAGGAGAACGAGGACAGGCATGGTTCCTCCCTTGGCAACTAGAGCCACACATGCCGCATGGCCATCGGACACTGTTCCAGAGCCCGTGCACTCTAGCAGAATAGTGGATACTGAACCTTCTCGTTCAGACCAAGAATTCAAAGTAGGAAGAACAAAAATCCTACTAGAATCCGACGCAGATCTCAGGGTCAATTACACTAGGCATTTGATATTTGTCCCTGGATTAGCTATGAGTGTTCACATGTTCCATAGGGGAAATGAAGCAGTCACTGCTCCAGTTAGTGATGCATTTACTACCCCAGTCAGCAGAACAAATGCGAATTCTGAGCTATCTACTAATTTTGTTTCAAATGTTGAGGAGGTTCATTTACATTCCGTTCCCAGTAGTAGATCTAGAACTGTGTCTACCATTATGTCCAATTCAATAGAGGATACCAATACGGTCAATTCGATAGAAGGCACCAATATGGTCAATTCCGTAGAGGACACCGATATGGTTGATATTGAGCATCCACTCATTTTATCTGGTGATAGGAAAATGCCTTTCACTTACTTGGCTAGTTTGTCGGCTAAGTGGGCATCAGGGAAGGAAAAATCTCCATCAGTTCGTGGAAAAATCAAGTGCTTTTTGACTGGTGTAAAAGGATTTCAATTCAGGCAAAGGACAACATACGATCTACATGCTTATGTTGATGACGGCAGCCTCATTTCTGAGGTCCTCATTGATCACGAGGCTGTACAGCAAGCGATTGGCCATTCTCCCAAGGATGTAACAGATGCTCTTGGTTCTTCTGATGTCAAAGTAGTGAGTGGCATGAAGGAGGCTTTGAGACAGTTTCAAATTTTCTTGGTAAATTTTGAGGGTACAATGCTGGTTGAGATGAATAGAACGTCTTCTCTGCCAGTTGTCCTTGAGATGGAGGAGGGTTGTCTGGAATCTGATGCTTGGCTGCTTTTGAGAAGACTCGAATGTTCGAATGCTGTTCAAACCAATGAGCATGCCCGTATAGACCCTATAGATGTGTCCCCTTAA 1989 46.3 MPRRRLRLSCSSDEDHENEDFEHDPQCPDSSTTSLQPPIIDNLNSHFNPNVSEPVQLSDDDDEQDFIDVSEHLSPPSPDSDHSLRHSPEPNPHVASREPSCPVSEFLRGLGLSLKREWLDACIRAHHGSVPGFLSLNPAEKGKLCFEQFLVSDMNYAGAGVLPENVDSMHLVDLPGPYVLQVIFAAKQNFRYYKNDLRLEVGAIVESLLSCFPCQVDEIVNISCPLKGRYQTAPASIKRCLKLSMTDGVQRVFGMEYRPIKGLEVLAPAGLKVVICNVSVRRGVLMLVPEAFEVLGGLVEELESARQRLVDEVNKPPRGRRTRTGMVPPLATRATHAAWPSDTVPEPVHSSRIVDTEPSRSDQEFKVGRTKILLESDADLRVNYTRHLIFVPGLAMSVHMFHRGNEAVTAPVSDAFTTPVSRTNANSELSTNFVSNVEEVHLHSVPSSRSRTVSTIMSNSIEDTNTVNSIEGTNMVNSVEDTDMVDIEHPLILSGDRKMPFTYLASLSAKWASGKEKSPSVRGKIKCFLTGVKGFQFRQRTTYDLHAYVDDGSLISEVLIDHEAVQQAIGHSPKDVTDALGSSDVKVVSGMKEALRQFQIFLVNFEGTMLVEMNRTSSLPVVLEMEEGCLESDAWLLLRRLECSNAVQTNEHARIDPIDVSP 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 208090 212429 + CmoCh10G000430.1 Cmo10g00043 389389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00043 662 Pfam RecQ mediated genome instability protein 111 307 IPR013894 -
Cmo10g00043 662 MobiDBLite consensus disorder prediction 1 100 - -
Cmo10g00043 662 Pfam Recq-mediated genome instability protein 1, C-terminal OB-fold 499 641 IPR032199 GO:0000166
Cmo10g00043 662 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 100 646 - -
Cmo10g00043 662 MobiDBLite consensus disorder prediction 1 26 - -
Cmo10g00043 662 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 100 646 - -
Cmo10g00043 662 Gene3D - 153 312 IPR042470 -
Cmo10g00043 662 SMART DUF1767_2 104 191 IPR033472 -
Cmo10g00043 662 MobiDBLite consensus disorder prediction 340 361 - -
Cmo10g00043 662 MobiDBLite consensus disorder prediction 27 55 - -
Cmo10g00043 662 MobiDBLite consensus disorder prediction 78 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00043 K10990 RMI1, BRAP75; RecQ-mediated genome instability protein 1 - csv:101222548 879.396
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g74 . . Bda06g00720 . . . . Bma12g01086 . . Cma10g00048 . Car10g00037 . Sed03g2779 . . Bhi02g00662 Tan09g2394 Cmetu02g0524 . . . . Cla06g01757 Cam06g1949 Cec06g1998 Cco06g2004 Clacu06g1906 Cmu06g1846 Cre06g2660 . . Cone13ag0234 Cone19ag0220 . . . . . Blo15g00201 . . Bpe07g00896 . . . . Cmo10g00043 . . . . . . . . . . . . . . . . . . . . . . Csa01g00040 Chy02g02679 Cme02g02082
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010501 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 0 1 1 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00043 Cmo_Chr10 FPKM 2.45212 3.31834 2.786817 2.183677 1.928112 1.43955 1.488192 3.010122 3.199729 2.903174