Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00044 ATGGGGGAGGAGGACAATAAACCGGCGGATTCAAAACCAGAGGAACCCCTGAAAGCGGCTCCTGATCAAGACAATAAACAACCCCAGAGCGAGAACCCACCGCCACCGGAGAACAAACAAGCGGAAGAACCAAAAGATGGCATCAAAGAGCAGCCTCTTCCTCAACCCCCTCAGGACATTGTCCTCGCTGTTTTTATGCATTGCGAAGGCTGTGCACGCAAGGTTCGCCGCTGCCTCAAAGGCTTCGAAGGGGTTGAAAGCGTGGAGACAGATTGCAGAACTCACAAAGTGGTGGTGAAAGGAGAGAAGGCCGATCCGCTCAAGGTTTTAGGGAGGCTACAGAGGAAAAGCCACAGACGGGTCGAATTGATCTCCCCTGTCCCCGAGCTCCCTGCTGCGAACCCCCCACCCGAAGAGAAGCCCAAAACAGAGGACAGCAAACCAGAGCCTCAGATTGTAACGGTTGTGTTGAAAGTGCACATGCACTGCGAGGCTTGCGCTCAAGAAATCAAAAGACGGATACACAGAATGAAAGGTGTTGAATCGGTGGACCCAGATCTAAAAAGCTCGCAGGTCACGGTGAAAGGAGCGATCGATCCGGCGGCGCTGGTTGAATATGTTCACCGCCGAACCGGAAAACACGCGGCGATTGTGAAGCAAGAGCCGGAAATTGCGCCGGAGAATAATTCGGACGATGGTGCAAAAGAAGTGAAAGAAGAGAAGAAAGCCAGCGCCGGTGACGGTGTCGGTGAGGGTGCCGAGAGTGAGAAAAAGGTGGAGGAAGAAAGTAAAGTGGAAGAGATACCCGGGGGCGCCGATGCTGGCGATGGGGAGACGGCTGCAGAAGAAGACCCAAAGGTGGTGGAAGTGAAGAAGAATGAACATCATTATTACCCGCAAAGGTACATCATGGAAATGTATCCGTATCCGGCGCCGATTATGGACGGCATAGGGTACCCGGCGGCGCACATGGCGGTGGACGCCTATCCGGCGCGGGTGATTGGGTACGAGTATCCACCTCAGATGTTCAGCGATGAAAACCCAAATGCGGCTTGCTCGCTTTCCTCCTCCTCCTCCATTTCTTCCCGAACAGAGAAAACAGCCCCTGATTTGGTGTACAAAATGAGTAGATTTTGGACGTTGGTCACCCAACTTCATACTCTTTCCGGGCCAGTTTTGATGTTGCTGTATCCACTTTACGCGTCGGTGGTAGCCATCGAAAGCACATCCAAATTGGACGATGAGCAGTGGTTGGCTTATTGGATCATCTACTCCTTTCTTACTCTCATGGAAATGGTTCTTCAGCCTGTATTAGAGTGGATACCAGTTTGGTATTCGGTGAAATTAGTATTTGTGGCGTGGCTGGTTCTGCCACAGTTCAAAGGTGCAGCCTTCTTGTATGATAGATTCGTGAGGCAGCAAATAAAGAAATATGGTGGTATGGGAAGCAATTCTGCTGATGCCAAAGCCAAGAATCACTAA 1482 51.35 MGEEDNKPADSKPEEPLKAAPDQDNKQPQSENPPPPENKQAEEPKDGIKEQPLPQPPQDIVLAVFMHCEGCARKVRRCLKGFEGVESVETDCRTHKVVVKGEKADPLKVLGRLQRKSHRRVELISPVPELPAANPPPEEKPKTEDSKPEPQIVTVVLKVHMHCEACAQEIKRRIHRMKGVESVDPDLKSSQVTVKGAIDPAALVEYVHRRTGKHAAIVKQEPEIAPENNSDDGAKEVKEEKKASAGDGVGEGAESEKKVEEESKVEEIPGGADAGDGETAAEEDPKVVEVKKNEHHYYPQRYIMEMYPYPAPIMDGIGYPAAHMAVDAYPARVIGYEYPPQMFSDENPNAACSLSSSSSISSRTEKTAPDLVYKMSRFWTLVTQLHTLSGPVLMLLYPLYASVVAIESTSKLDDEQWLAYWIIYSFLTLMEMVLQPVLEWIPVWYSVKLVFVAWLVLPQFKGAAFLYDRFVRQQIKKYGGMGSNSADAKAKNH 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 212985 216097 - CmoCh10G000440.1 Cmo10g00044 389390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00044 493 ProSiteProfiles Heavy-metal-associated domain profile. 161 207 IPR006121 GO:0046872
Cmo10g00044 493 MobiDBLite consensus disorder prediction 128 149 - -
Cmo10g00044 493 Pfam Heavy-metal-associated domain 157 213 IPR006121 GO:0046872
Cmo10g00044 493 Pfam Heavy-metal-associated domain 62 114 IPR006121 GO:0046872
Cmo10g00044 493 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 353 - -
Cmo10g00044 493 MobiDBLite consensus disorder prediction 1 55 - -
Cmo10g00044 493 CDD HMA 156 216 IPR006121 GO:0046872
Cmo10g00044 493 CDD HMA 66 122 IPR006121 GO:0046872
Cmo10g00044 493 Pfam TB2/DP1, HVA22 family 398 473 IPR004345 -
Cmo10g00044 493 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 353 IPR044577 GO:0046872
Cmo10g00044 493 SUPERFAMILY HMA, heavy metal-associated domain 150 221 IPR036163 GO:0046872
Cmo10g00044 493 Gene3D - 55 129 - -
Cmo10g00044 493 SUPERFAMILY HMA, heavy metal-associated domain 61 115 IPR036163 GO:0046872
Cmo10g00044 493 ProSiteProfiles Heavy-metal-associated domain profile. 66 99 IPR006121 GO:0046872
Cmo10g00044 493 MobiDBLite consensus disorder prediction 1 21 - -
Cmo10g00044 493 MobiDBLite consensus disorder prediction 217 288 - -
Cmo10g00044 493 Gene3D - 150 217 - -
Cmo10g00044 493 MobiDBLite consensus disorder prediction 225 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00044 - - - bhj:120070801 481.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00616 Cmo-Chr3:5755829 Cmo10g00044 Cmo-Chr10:212985 3.85E-57 dispersed
Cmo07g00352 Cmo-Chr7:1629473 Cmo10g00044 Cmo-Chr10:212985 4.23E-56 dispersed
Cmo10g00044 Cmo-Chr10:212985 Cmo11g00025 Cmo-Chr11:107890 5.85E-129 dispersed
Cmo14g02015 Cmo-Chr14:14755018 Cmo10g00044 Cmo-Chr10:212985 2.30E-06 dispersed
Cmo10g00044 Cmo-Chr10:212985 Cmo11g00023 Cmo-Chr11:103896 1.33E-06 wgd
Cmo10g00044 Cmo-Chr10:212985 Cmo13g00848 Cmo-Chr13:7815071 1.61E-85 wgd
Cmo10g00044 Cmo-Chr10:212985 Cmo18g00228 Cmo-Chr18:1491157 1.01E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g80 . . . . . Bpe13g00195 . . . . Cma10g00049 Cma11g00023 Car10g00038 . Sed08g0020 . . Bhi02g00663 Tan09g2392 Cmetu02g1141 . . . . Cla06g01756 Cam06g1948 Cec06g1997 Cco06g2003 Clacu06g1905 Cmu06g1845 Cre06g2659 . Cone16ag0005 . . . . . . . . . Bda14g01350 . Bpe15g00227 Bma03g01244 . . Cmo10g00044 . . . . . . Cpe18g00917 . . . . . . . . . . . . . . Lsi06g01655 Csa01g00041 Chy02g02677 Cme02g02081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010284 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00044 Cmo_Chr10 FPKM 22.493032 22.59 2.20238 1.950066 0.919288 0.761709 0.953864 1.945978 1.797636 1.709209