Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00053 ATGGAGAGCAACAACCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCCTTACACCACCTCCTTCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGTCAAGAAATCGAACAGGTTAATGACTTTAAAAACCATCAGCTTCCTTTGGCCCGCATTAAGAAGATCATGAAAGCCGATGAGGACGTGCGTATGATATCCGCTGAGGCACCCATTTTGTTCGCCAAGGCGTGCGAGCTCTTCATTCTTGAACTCACGATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCAGCCATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGTGGCATGGTTGGAGCCACTGCCAGTGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGCCCCCTGGGGGGTTGATGATTGGGAGACCAGCAATGGATCCCACCGGAGTCTACGCTCAGCCGCCGTCGCAGGCGTGGCAATCAGTGTGGCAGCCGGCCGCAGAGGATGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGCAATCTTGATGGTCAGAGATATTTGAAAATAAATTGGCGTGCACATCCAAATACTGAAGGAAAGTTAAGCAATTCTTGTGTAGATGATCTGCTGTGTGGTGCCAATGAAAAGATGATGCGTTTTGCTGATGCTATCCAGGGCGTAAAACTAAGTGTATTTTTCTTTTATGTTTCCTTCTTTTGGAACGGGGTTACCCTTAGAGACTTGAGCGTTATGTTGGACTCCTTTTTTATATGTTTAGGACATGTTGTGTAG 897 50.61 MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGLMIGRPAMDPTGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQRYLKINWRAHPNTEGKLSNSCVDDLLCGANEKMMRFADAIQGVKLSVFFFYVSFFWNGVTLRDLSVMLDSFFICLGHVV 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 248351 251658 + CmoCh10G000530.1 Cmo10g00053 389399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00053 298 Pfam Core histone H2A/H2B/H3/H4 47 119 IPR007125 GO:0003677
Cmo10g00053 298 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 219 - -
Cmo10g00053 298 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982
Cmo10g00053 298 MobiDBLite consensus disorder prediction 1 23 - -
Cmo10g00053 298 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 4 219 - -
Cmo10g00053 298 SUPERFAMILY Histone-fold 29 128 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00053 Cmo-Chr10:248351 Cmo10g01156 Cmo-Chr10:9920448 6.29E-67 dispersed
Cmo10g00053 Cmo-Chr10:248351 Cmo11g00031 Cmo-Chr11:136282 5.83E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10412 PF00808 CBFD_NFYB_HMF 3.80E-17 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00053 - - cmax:111500215 340.887