Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00057 ATGGCGGAGAGCCTCCGAATTCGAAACGTTCATTTCATCACTCTCGTTCTCCTCTGTATCGGATTCCCCGCTCATAGTAATCGGATTCGGCTCGATGAACACCAGCCGCTCTCCAAAATTGATGTATACAAGGCTACTGTTGCACTCCGAAACAACGCCTACATCAAAGCCTCGCCGCTTGTTTTAGGCCTCAATGGCGAGGATACCGATTGGGTGACGATCAAGTTTTTACATCCTGAACCCTCAGCAGATGATTGGATAGCAGTGTTTTCTCCTGCGAAGTTTAACTCATCACCCTGTCCTGGTTCAAATAAAAAGGTCCAAACTCCATTAATCTGCTCGAGCCCTATAAAGTTCAATTATGCAAACTACTCAAATCCAAATTATGCGAGGACAGGAAAAGCTTCTTTGGTATTCGAGTTGATCAATCAGCGAGCTGACTTCTCATTTGCCTTATTTTCAGGAGGTCTTTCAAATCCCAAACTTATTGCTGTTTCAAATCCACTTTCATTTAAGAATCCTAAAGCACCATTGTTTCCTCGCCTTGCACATGGGAAGCTATGGAATGAAATGACAGTAACCTGGACCAGTGGGTACAATATAAGTGAAGCTATTCCCTTTGTTGAATGGGGTTTAGAAGGAGAGACACAGACTAGATCCCCTGCTGGGACGCTGACATTTAGTAGGAAGAGCATGTGTGGTGCACCTGCACGAACTGTTGGTTGGCGTGATCCTGGTTTCTTTCATACGAGTTTCCTACAAAACTTATGGCCAAACACTGTGTACACGTACAGACTGGGTCATCGCTTGTTTAGTGGCTCATATATTTGGAGCAAGAGCTATTCATTCAGGTCATCACCGCATCCTGGAGAAGAATCATTACAGCGTGTCATTATATTTGGTGATATGGGGAAGGGACAACGTGATGGCTCAAATGAGTACAGCAACTATCAACCCGGAGCATTGAACACCACTGACCAGCTCATCAAAGACTTGGACAACATTGACATTGTCTTTCATATCGGAGACCTATCTTATGCAAATGGGTATCTCTCACAGTGGGACCAATTCACTGCGCAGGTGGAGCCCATTGCATCTAGGGTCCCCTACATGGTTGCAAGTGGTAACCATGAGCGTGACTGGCCGAATACCGGGTCCTTCTATGCAAACATGGATTCGGGTGGGGAGTGCGGAGTTCCAACGGAGACCATGTTTTATTTTCCTGCCGAAAACAGAGCAAAGTTCTGGTATAAGACAGATTATGGATTATTCCGGTTCTGTATAGTAGACTCTGAACATGACTGGCGAGAAGGCTCAGAACAGTACAGATTCATAGAGCATTGCCTTGCATCAGCGGATAGACGAAGACAACCTTGGCTGATATTTGCTGCTCATCGTGTGCTTGGCTACTCTTCCAACGATTGGTATGCGTTGGAGGGATCATACGAAGAACCCATGGGAAGGGAAAGCCTACAGAAACTCTGGCAGAAGTACAGGGTTGATATCGCCTTCTATGGCCATGTCCATAACTACGAAAGAACATGTCCAATTTATCAGAATCAATGCGTGAATGAAGAAAAAAGTCACTATTCGGGCACTATGAATGGCACAATCCACGTGGTTGCTGGCGGAGCAGGGAGCCACTTATCCGCATTCACCAAGGAAATCCCCAAATGGAGTCTATACAGAGACTACGATTTTGGTTTCGTAAAGTTGACGGCATTCGACCGTCACTCTCTGCTTTTCGAGTACAAGAAAAGCAGCGACGGTAAGGTGTATGATTCCTTTACCATTTCAAGAGACTACAGAGACGTCCTGGCCTGTGTTCCCGACAGTTGCGAACGCACAACTATGGCCGCCTGA 1863 45.95 MAESLRIRNVHFITLVLLCIGFPAHSNRIRLDEHQPLSKIDVYKATVALRNNAYIKASPLVLGLNGEDTDWVTIKFLHPEPSADDWIAVFSPAKFNSSPCPGSNKKVQTPLICSSPIKFNYANYSNPNYARTGKASLVFELINQRADFSFALFSGGLSNPKLIAVSNPLSFKNPKAPLFPRLAHGKLWNEMTVTWTSGYNISEAIPFVEWGLEGETQTRSPAGTLTFSRKSMCGAPARTVGWRDPGFFHTSFLQNLWPNTVYTYRLGHRLFSGSYIWSKSYSFRSSPHPGEESLQRVIIFGDMGKGQRDGSNEYSNYQPGALNTTDQLIKDLDNIDIVFHIGDLSYANGYLSQWDQFTAQVEPIASRVPYMVASGNHERDWPNTGSFYANMDSGGECGVPTETMFYFPAENRAKFWYKTDYGLFRFCIVDSEHDWREGSEQYRFIEHCLASADRRRQPWLIFAAHRVLGYSSNDWYALEGSYEEPMGRESLQKLWQKYRVDIAFYGHVHNYERTCPIYQNQCVNEEKSHYSGTMNGTIHVVAGGAGSHLSAFTKEIPKWSLYRDYDFGFVKLTAFDRHSLLFEYKKSSDGKVYDSFTISRDYRDVLACVPDSCERTTMAA 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 268554 275077 + CmoCh10G000570.1 Cmo10g00057 389403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00057 620 Gene3D - 291 604 IPR029052 -
Cmo10g00057 620 PANTHER PURPLE ACID PHOSPHATASE-RELATED 11 619 - -
Cmo10g00057 620 PANTHER PURPLE ACID PHOSPHATASE 11 619 - -
Cmo10g00057 620 SUPERFAMILY Metallo-dependent phosphatases 296 611 IPR029052 -
Cmo10g00057 620 SUPERFAMILY Purple acid phosphatase, N-terminal domain 154 287 IPR008963 GO:0003993|GO:0046872
Cmo10g00057 620 Pfam Calcineurin-like phosphoesterase 296 511 IPR004843 GO:0016787
Cmo10g00057 620 Pfam Purple acid Phosphatase, N-terminal domain 188 284 IPR015914 GO:0003993|GO:0046872
Cmo10g00057 620 CDD MPP_PAPs 295 600 IPR041792 -
Cmo10g00057 620 Gene3D - 180 288 - -
Cmo10g00057 620 Pfam Fn3-like domain from Purple Acid Phosphatase 55 173 IPR040974 -
Cmo10g00057 620 Pfam Iron/zinc purple acid phosphatase-like protein C 536 595 IPR025733 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00057 K22390 ACP7; acid phosphatase type 7 - csv:101214303 1166.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00057 Cmo-Chr10:268554 Cmo17g00102 Cmo-Chr17:553460 2.48E-24 dispersed
Cmo04g02307 Cmo-Chr4:17154500 Cmo10g00057 Cmo-Chr10:268554 2.53E-106 transposed
Cmo12g00081 Cmo-Chr12:438795 Cmo10g00057 Cmo-Chr10:268554 0 transposed
Cmo12g00660 Cmo-Chr12:4323635 Cmo10g00057 Cmo-Chr10:268554 6.56E-60 transposed
Cmo10g00057 Cmo-Chr10:268554 Cmo11g00035 Cmo-Chr11:145332 6.04E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g110 . . . . . . . . . . . . . . . . . Bhi02g00517 . . . . . . . . . . . . . . Cone16ag0017 . . . . . . . . . . . Bpe15g00217 . Bma08g00130 . Cmo10g00057 . . . . . . Cpe18g00903 . . . . . . . . . . . . . . . . . Cme02g02064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007476 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 1 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00057 Cmo_Chr10 FPKM 0.4689 0.296402 0.38813 0.786298 1.033231 1.127135 1.178875 2.243342 2.296499 2.490196