Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00058 ATGATTACACAGCTGAGTTTCGCTTCTTCTGGCTCAATTCCAAGCTTGTTGAAACTGGTGCTTGTGAGCCACCTTCATAGTATCACGAATATAAATTCAGCTCGATACCTGTATATACATGCCATCAAAATAGTCTCTATGTCGCTTATACAGGAGCCATACCTTTTGTCAAGGATGATCTATTATTTTACATTTGATAACCTCTGTTATCTTGTATTGGAATATTTTGAAACCTGTGGAACACTCCTTATGCATTCCCATTACCAGCCAGGTACACCACTTGCATTGGTCTGGAAGGATGAGAATTGCAGTCGATATGTTATTGACACAGATAAAATGGACAAGTTCCAAGCCAACAGCAGGTACTTTATCTCTGCATTTCTTGTTATTAAAAAAAAAAACTATATGAATGTCTGCAATTATTTTCTTCCTTTCTTTTTCTTTTTTATAAATAATGTTGCCACTATCTTAGTTTCTAGTCAATTGCAGTGGTCAATGTTTATAATGCCAATACTGCCTTATTTGAATGATCAGCTGGTTTTGGAGCTACAAGGTGATGGAAAGGGTGCTAAATTAGATGATCCTTCTGTGGACATTGGTTGCTTAGATGGTGACTTGATCGAAAAGGGTTTGTCTTCAGGTAATCTATTTCGATTTATCATTGTTGATTGTGGGTTGACCATTGTGGACGGGAGGATTCAGAGGGTAGATTTACTTTACACTGGCAAGGTCAATCGAGCTCGAGGATACCATTTATGGAAACCACATATGCAGGTTGTGTTTCAATACGCGGCTCGTTGCTCACTTTTAAGCATAGATTATCCATTATCACCCATCAATCATCGAATGATTGGAGAAGATAATGTTACTGAAATTGTTGGATAG 885 37.63 MITQLSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEPYLLSRMIYYFTFDNLCYLVLEYFETCGTLLMHSHYQPGTPLALVWKDENCSRYVIDTDKMDKFQANSRYFISAFLVIKKKNYMNVCNYFLPFFFFFINNVATILVSSQLQWSMFIMPILPYLNDQLVLELQGDGKGAKLDDPSVDIGCLDGDLIEKGLSSGNLFRFIIVDCGLTIVDGRIQRVDLLYTGKVNRARGYHLWKPHMQVVFQYAARCSLLSIDYPLSPINHRMIGEDNVTEIVG 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 277174 279298 - CmoCh10G000580.1 Cmo10g00058 389404

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00058 K13151 SNUPN, RNUT1; snurportin-1 - ming:122079707 118.627
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00058 Cmo11g00036 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00058 Cmo-Chr10:277174 Cmo11g00036 Cmo-Chr11:148956 1.52E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g111 . . . . . . . . . . . Cma11g00034 . Car11g00031 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00058 Cmo11g00036 . . . . . . . . . . . . . . . . . . . . . . . Cme02g02063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018595 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00058 Cmo_Chr10 FPKM 26.143353 24.539015 20.920782 22.021164 55.828625 46.029068 53.054241 17.97971 19.48667 18.102022