Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00062 ATGGTGATGGCAGCGACAGAGGAGAGTCCGAGAAGCCCAGAGGCGAAGGTGGGGATGCGAGTGGAAGATTTATGGGACGTTCAAGAGCCGCAGCTCAGTCCCACTGAAAAGCTTAATGCTTGCTTTGAAAGCATCCCTGTCTCTGCCTTTCCTCCTGCCCCTCTTAATCAAGAATTGCTCATTCTGTGCTCTTTTGAATTTCATAGAAGCCAATATGTTCTTCATTTCCACGTTGTTTTTATTGGTTTGATCATTTTGAAGTGTTGTTATTCAGTAATTGAGATAAAATCGGATAGCAGTCTAGCTGAAGCTGTTCAAATTTTGGCCCAACATAAGATCCTCAGTGCACCGGTGGTGGACGTTGACGCACCTGATCATGCAAGCTGGATTGATAGATACCTTGGAGTCGTTGAGTTTGCTGGAATTGCCGTTTGGATTCTTTATCAGTCGGAGCCTCCATCCCCGAGAAGTCCTAGTGATGGAAGTGCTGTGGCGGCGGCAAGAAATGGGGTGATATCTCCTTTAGAACAGCAGGTACTCGGCCCAGAATCCGCCGCAGCGACGTCGGGAAGCTTTTTCGAGTCGTTAACTTCCTCTGAATTGTACAAGAGCACACAGGTGCGAGACATCTCGGGATCTTTCCGTTGGGCGCCATTTCTTGCGTTGCAGACGTCGAATTCCTTCTTGACAATGCTGTTACTGCTATCAAAGTACAAAATGAAAAGCATACCAGTGGTGAACTTGGGGGAGGGAAAGATTGAGAACATCATTACACAATCAGCTGTGATTCACATGTTAGCAGAATGTGCAGGGCTTCAATGGTTTGAAAGTTGGGGAACAAAGACGCTCTCGGAGCTCGGTCTTCCGATGATGTCACCGGCTTCTATTGTCAAGGTGTACGAGGACGAGCCTGTTCTTCAAGCATTCAAACTTATGAGGAAGAAGAAGGTTGGAGGTATACCTGTTATTGAAAAGGGTGGGAGCAAGGCTGTAGGCAACATTAGTTTAAGAGATATTCATTTCTTGCTTACTGCACCGGAAATCTACCACGATTACAGGTTTGCCATCAAAATCTTCGTTGATTGGCAGGCAAAATCGATAACAGCCAAGAACTTTCTGACTGCGGTTAGAAGCTACTTAGAGAAGCATGAAGCGTTCTCTCCGATGCTGAGCGACATGATTACATGCAAGAAGGATCACTCTGTAAAGGATTTGATTTTGCTGCTCGACTCGAAGAAGATCCACCGTGTGTATGTAGTCGACGACAACGGCAATCTGGAAGGAGTTGTCACCCTCAGAGATATCATCTCGAGGTTAGTCCATGAACCTCGTGGTTACTTTGGCGATTTCTTCGACGGTGTTCTACCATTGCCTGAGAATAGTCGGGTTTGA 1392 46.41 MVMAATEESPRSPEAKVGMRVEDLWDVQEPQLSPTEKLNACFESIPVSAFPPAPLNQELLILCSFEFHRSQYVLHFHVVFIGLIILKCCYSVIEIKSDSSLAEAVQILAQHKILSAPVVDVDAPDHASWIDRYLGVVEFAGIAVWILYQSEPPSPRSPSDGSAVAAARNGVISPLEQQVLGPESAAATSGSFFESLTSSELYKSTQVRDISGSFRWAPFLALQTSNSFLTMLLLLSKYKMKSIPVVNLGEGKIENIITQSAVIHMLAECAGLQWFESWGTKTLSELGLPMMSPASIVKVYEDEPVLQAFKLMRKKKVGGIPVIEKGGSKAVGNISLRDIHFLLTAPEIYHDYRFAIKIFVDWQAKSITAKNFLTAVRSYLEKHEAFSPMLSDMITCKKDHSVKDLILLLDSKKIHRVYVVDDNGNLEGVVTLRDIISRLVHEPRGYFGDFFDGVLPLPENSRV 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 285217 287259 - CmoCh10G000620.1 Cmo10g00062 389408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00062 463 ProSiteProfiles CBS domain profile. 389 447 IPR000644 -
Cmo10g00062 463 Gene3D - 279 442 IPR046342 -
Cmo10g00062 463 ProSiteProfiles CBS domain profile. 291 352 IPR000644 -
Cmo10g00062 463 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA-1 8 463 - -
Cmo10g00062 463 ProSiteProfiles CBS domain profile. 85 154 IPR000644 -
Cmo10g00062 463 SMART cbs_1 218 267 IPR000644 -
Cmo10g00062 463 SMART cbs_1 295 344 IPR000644 -
Cmo10g00062 463 SMART cbs_1 392 440 IPR000644 -
Cmo10g00062 463 SMART cbs_1 91 147 IPR000644 -
Cmo10g00062 463 SUPERFAMILY CBS-domain pair 90 267 IPR046342 -
Cmo10g00062 463 CDD CBS_pair_SF 296 436 - -
Cmo10g00062 463 SUPERFAMILY CBS-domain pair 289 449 IPR046342 -
Cmo10g00062 463 Gene3D - 85 272 IPR046342 -
Cmo10g00062 463 Pfam CBS domain 291 339 IPR000644 -
Cmo10g00062 463 Pfam CBS domain 389 440 IPR000644 -
Cmo10g00062 463 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 463 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00062 - - - csv:101214786 703.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00062 Cmo11g00038 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00396 Cmo-Chr2:2039142 Cmo10g00062 Cmo-Chr10:285217 7.32E-16 dispersed
Cmo10g00062 Cmo-Chr10:285217 Cmo18g01195 Cmo-Chr18:11970852 2.13E-73 dispersed
Cmo10g00062 Cmo-Chr10:285217 Cmo11g00038 Cmo-Chr11:159719 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g117 . . Bda06g00730 . Bpe12g00484 . . . . . Cma10g00066 Cma11g00036 Car10g00054 Car11g00033 . . Cpe04g01613 Bhi02g00681 . . . . . . Cla06g01738 Cam06g1928 . Cco06g1982 Clacu06g1884 . Cre06g2641 . . Cone13ag0216 Cone19ag0205 . . . . . Blo15g00210 . . . . . . . Cmo10g00062 Cmo11g00038 . . . . . . . . . . . . . . . . . . . . Lsi06g01638 Csa01g00060 Chy02g02659 Cme02g02061
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003995 2 1 2 1 2 1 2 1 0 2 1 1 2 2 2 2 0 2 2 1 2 1 1 1 1 0 1 4 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00062 Cmo_Chr10 FPKM 5.026627 8.065545 3.633272 3.396661 5.789043 5.756946 4.793206 0.426833 0.313325 0.282405