Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00069 ATGACGTCGACGTATCTTCTGTATGAATCTGCTTCTGGCTATGCTCTGTTTCATGCCCATGGCCTCGACGAAATTGGGCAGAATACTGAAGCCGTTCGGAGCTCCGTCTCCGACCTTAACCGCTTCGGCAAGGTCGTGAAGCTTGCTGCTTTCCACCCCTTTGAGTCGGCTCTTGATGCGCTCAAGCAGTGCAACTCGGTCTCCGAAGGTCTCATGACTGATGAGCTTAGGAGTTTTCTGGAAATTAACCTTCCAAAAGTTAAGGAAGGCAAAAAGGCCAAGTTCGTTTTGGGACTCGCTGAACCCAAAATTGGTTCTAACATATTTGAAGAGACTAAAATCCCATGCCAAAGCAATGAGTTCGTTCTGGAGCTGCTTCGCGGTGTTCGACTACACTTCGACAAATTTATCAAGGACCTCAAGACGGGGGATTTGGAGAAAGCCCAACTTGGTCTGGGACACAGTTACAGTCGAGCAAAGGTCAAGTTCAATGTTAACCGTGTTGATAACATGGTGATTCAAGCTATCTTCCTTCTTGACACTCTAGACAAGGACATTAATTCCTTCTCCATGAGAGTCAGAGAATGGTATTCCTGGCATTTCCCCGAGTTGGTGAAGATTGTCAGTGACAATTATCTTTATGCTAAAGTTTCTAAATTCATTGAGGACAAATCGAAGTTGGCTGAAGATAAAATCCCTGCCTTGACTGATATTATTGGTGATGAAGATAAAGCAAAGGAGATTGTTGAAGCAGCTAAAGCCTCCATGGGCCAGGATTTGTCTCCTATTGACTTGATTAATGTCCAGCAATTTGCACAGAGGGTGATGGATCTATCTGAATACAGGAAGAAGCTTTTTGATTATCTAGTTGCTAAAATGAATGATATTGCTCCCAATTTGGCCTCTTTGATTGGTGAAGTTGTTGGGGCCCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTGGCCAAGTGCCCTTCTTCCACCCTTCAGATTCTCGGTGCTGAGAAAGCACTCTTCAGGGCTTTGAAGACAAAAGGAAACACTCCTAAATATGGTCTGATCTTTCATTCTTCTTTCATTGGGCGAGCATCTGCACGGAACAAAGGCCGAATGGCTCGTTATCTTGCAAACAAATGTTCTATTGCATCACGTATTGATTGCTTTGCAGAGAATAGTACCACAACCTTTGGAGAGAAACTTCGTGAGCAAGTTGAAGAGCGCCTTGACTTTTATGACAAGGGAATAGCACCTCGTAAAAACATAGATGTTATGAAATCTGCAATTGAAAGTGCTGATAACAAAGCAACTGATATGGACATAGAAGAAGTGGCAAGTGAAGCTTCAGGGAAAAAGAGTAAGAAAAAGAAATCAAAGGCTAGTGCGAACGGTGAGGTTGAGGACAGACCAAGTGCCACTGAAAACGGTGACGCGAAATCAGAAAAGAAGAAGAAGAAGGAGAAGCGAAAGTTGGATAAGGAAACAGAGGAGGAGCAGCAGCAACAGGCTTCAGAAATGTTAAATGGAGAAGTAAACGGGGAGGAAGAAGCAGGCAAGAAGAAGAAGAAAAAGAAGAGCAAGGAGGAGGATCATGTTGCTGCAGAAGATAGTAAGAAGAAAAAGAAGAAGAAGTCGAAGAGCGAAGATGCCGAATAG 1656 43.54 MTSTYLLYESASGYALFHAHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPFESALDALKQCNSVSEGLMTDELRSFLEINLPKVKEGKKAKFVLGLAEPKIGSNIFEETKIPCQSNEFVLELLRGVRLHFDKFIKDLKTGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVSDNYLYAKVSKFIEDKSKLAEDKIPALTDIIGDEDKAKEIVEAAKASMGQDLSPIDLINVQQFAQRVMDLSEYRKKLFDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTKGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAENSTTTFGEKLREQVEERLDFYDKGIAPRKNIDVMKSAIESADNKATDMDIEEVASEASGKKSKKKKSKASANGEVEDRPSATENGDAKSEKKKKKEKRKLDKETEEEQQQQASEMLNGEVNGEEEAGKKKKKKKSKEEDHVAAEDSKKKKKKKSKSEDAE 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 314987 318998 + CmoCh10G000690.1 Cmo10g00069 389415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00069 551 Pfam NOP5NT (NUC127) domain 5 70 IPR012974 -
Cmo10g00069 551 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 3 548 IPR045056 GO:0030515|GO:0031428|GO:0032040
Cmo10g00069 551 MobiDBLite consensus disorder prediction 459 500 - -
Cmo10g00069 551 Pfam snoRNA binding domain, fibrillarin 178 410 IPR002687 -
Cmo10g00069 551 SMART NOSIC_2 171 223 IPR012976 -
Cmo10g00069 551 Gene3D Nop domain 300 423 IPR042239 -
Cmo10g00069 551 ProSiteProfiles Nop domain profile. 296 414 IPR002687 -
Cmo10g00069 551 PANTHER BNACNNG34340D PROTEIN 3 548 - -
Cmo10g00069 551 Coils Coil 477 504 - -
Cmo10g00069 551 SUPERFAMILY Nop domain 164 413 IPR036070 -
Cmo10g00069 551 MobiDBLite consensus disorder prediction 444 551 - -
Cmo10g00069 551 MobiDBLite consensus disorder prediction 512 551 - -
Cmo10g00069 551 Gene3D - 141 299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00069 K14564 NOP56; nucleolar protein 56 - csv:101216223 897.116
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01200 Cmo-Chr5:9399345 Cmo10g00069 Cmo-Chr10:314987 1.59E-107 dispersed
Cmo10g00069 Cmo-Chr10:314987 Cmo11g01296 Cmo-Chr11:8807598 0 dispersed
Cmo10g00069 Cmo-Chr10:314987 Cmo12g01118 Cmo-Chr12:10223333 9.45E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g142 . . Bda06g00736 . . . . Bma12g01076 . . Cma10g00072 . Car10g00060 . . . . Bhi02g00536 . . . Hepe09g0060 . . Cla06g01731 Cam06g1922 Cec06g1972 Cco06g1976 Clacu06g1878 Cmu06g1820 Cre06g2635 . . Cone13ag0211 Cone19ag0200 . . . . . Blo15g00215 . . Bpe07g00883 . . . . Cmo10g00069 . . . . . . . . . . . . . . . . . . . . . Lsi06g01631 Csa01g00068 Chy02g02652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003680 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 3 1 1 3 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00069 Cmo_Chr10 FPKM 12.165316 12.417926 15.506494 14.416206 20.140671 21.503998 23.386436 31.705818 34.493153 33.576313