Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00070 ATGGCCAGTAGTTCTGGATCAGCGAGATTAGAAGATGTCCCCTCCATCGATCTCATGTCCGAGCTCCTCCGTCGCATGAAGTGCGCTTCAAAACCCGACAAGCGCCTTATTCTCATTGATCATTTTTGTTCTACAGGTCCACCTGGATCAGGAAAAGGCACCCAATCGCCAATCATCAAGGATGAATACTGCTTGTGTCACTTGGCTACTGGTGATATGTTAAGAGCTGCTGTTGCTGCAAAAACCCCACTTGGCATTAAGGCTAAGGAGGCTATGGACAACGGTGGACTTGTGTCTGATGACTTGGTTGTTGGCATCATAGATGAAGCAGTCAAGAAGCCTTCATGTCAGAAAGGTTTTATTCTTGATGGATTTCCTAGAACAGTGGTCCAAGCACAGAAGCTCGATCAGATGCTAGAAAAGCAGGGTACTAAAATTGATACGGTGCTTAACTTTTCCATTGATGATGCGATCTTGGAGGAGAGGATTACAGGACGATGGATACACCCATCAAGCGGAAGGTCTTACCACACGAAATTTGCTCCTCCAAAGGTTGCTGGTGTTGATGATGATGATACTGCAGCAGTTCTCAAATCTCGGCTGGAGGCTTTCCACAAGCAAACAGAGCCGGTGATTGATTACTATTCCAAGAAGAAAATTGTCGCAGAGCTTCAAGCAGAGAAGCCTCCCAAAGAGACCTTTAAGACGAAGAGCTTCACAGATGAGAAGCCCCTCCAAAAATATGCGTATGCCGCTTTAGACGGCGAACACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTTTGCGTTCATCGCACGGCTTCGTACCCTAAAAAATGGCTTCGCGTAAGCGCGGAGTCATTCGTCGGATCAAAGTCTATCGCGCTACGGAAAACTGCAGCCAAAGCAAGATATTCTTTGATGTCTTCTTTCCGCTCTTTCCTCAACAGCCCTGTTGGCCCTAAAACAACTCATTTTTGGGGGCCTGTTGCTAACTTTGGTTTCGTTGCTGCGGGGCTTGCAGATGTGAAAAAACCCGCCGATATGATTTCTGGCAGAATGACGGCAGTTTTGTGCGTGTATTCGTTGCTATGCATGAGATTTGGGTACATGGTTCGGCCTAGGAACTATCTGATTGTGGGATGTCATGGTGCCAATGAGACTGTTCAGCTCTATCTTCTCTCTCGTTGGGCGATGGGCAAGCGAGAGACTCTAAATCGTAGCAACGAGTAG 1239 46.89 MASSSGSARLEDVPSIDLMSELLRRMKCASKPDKRLILIDHFCSTGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDNGGLVSDDLVVGIIDEAVKKPSCQKGFILDGFPRTVVQAQKLDQMLEKQGTKIDTVLNFSIDDAILEERITGRWIHPSSGRSYHTKFAPPKVAGVDDDDTAAVLKSRLEAFHKQTEPVIDYYSKKKIVAELQAEKPPKETFKTKSFTDEKPLQKYAYAALDGEHTVFFSKRRKNSSLCVHRTASYPKKWLRVSAESFVGSKSIALRKTAAKARYSLMSSFRSFLNSPVGPKTTHFWGPVANFGFVAAGLADVKKPADMISGRMTAVLCVYSLLCMRFGYMVRPRNYLIVGCHGANETVQLYLLSRWAMGKRETLNRSNE 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 319459 325897 + CmoCh10G000700.1 Cmo10g00070 389416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00070 412 Gene3D - 6 238 IPR027417 -
Cmo10g00070 412 CDD ADK 35 232 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cmo10g00070 412 Pfam Mitochondrial pyruvate carriers 313 404 IPR005336 GO:0005743|GO:0006850
Cmo10g00070 412 PRINTS Adenylate kinase signature 120 136 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cmo10g00070 412 PRINTS Adenylate kinase signature 43 56 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cmo10g00070 412 PRINTS Adenylate kinase signature 71 85 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cmo10g00070 412 PRINTS Adenylate kinase signature 206 220 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cmo10g00070 412 PRINTS Adenylate kinase signature 189 204 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cmo10g00070 412 PANTHER NUCLEOTIDE KINASE 12 233 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cmo10g00070 412 PANTHER ADENYLATE KINASE 4 12 233 - -
Cmo10g00070 412 ProSitePatterns Adenylate kinase signature. 120 131 IPR033690 -
Cmo10g00070 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 218 IPR027417 -
Cmo10g00070 412 Pfam Adenylate kinase 46 219 - -
Cmo10g00070 412 Pfam Adenylate kinase, active site lid 166 192 IPR007862 GO:0004017
Cmo10g00070 412 TIGRFAM adk: adenylate kinase 45 235 IPR006259 GO:0004017|GO:0005524|GO:0016776
Cmo10g00070 412 Hamap Adenylate kinase [adk]. 34 240 IPR000850 GO:0005524|GO:0006139|GO:0019205
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00070 K00939 adk, AK; adenylate kinase [EC:2.7.4.3] - csv:101216714 402.134
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00070 Cmo11g00047 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00070 Cmo-Chr10:319459 Cmo12g01190 Cmo-Chr12:10724342 5.95E-34 dispersed
Cmo13g00429 Cmo-Chr13:5329582 Cmo10g00070 Cmo-Chr10:319459 2.09E-11 dispersed
Cmo18g00571 Cmo-Chr18:4738700 Cmo10g00070 Cmo-Chr10:319459 3.26E-11 dispersed
Cmo03g01020 Cmo-Chr3:7631334 Cmo10g00070 Cmo-Chr10:319459 2.58E-38 transposed
Cmo10g00070 Cmo-Chr10:319459 Cmo11g00047 Cmo-Chr11:206748 1.06E-59 wgd
Cmo10g00070 Cmo-Chr10:319459 Cmo11g01630 Cmo-Chr11:11605665 1.66E-08 wgd
Cmo10g00070 Cmo-Chr10:319459 Cmo14g00724 Cmo-Chr14:3709914 4.31E-08 wgd
Cmo10g00070 Cmo-Chr10:319459 Cmo18g00202 Cmo-Chr18:1355141 1.53E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g148 . . . . . . . . . . Cma10g00073 Cma11g00047 Car10g00062 Car11g00041 . . Cpe04g01604 Bhi02g00541 Tan09g2354 . . Hepe09g0064 . . Cla06g01729 Cam06g1919 Cec06g1969 Cco06g1973 Clacu06g1875 Cmu06g1817 Cre06g2632 Cone2ag0961 Cone16ag0030 . Cone19ag0198 . . . . . . . . . . . . . Cmo10g00070 Cmo11g00047 . . . . . . . . . . . . . . . . . . . . Lsi06g01627 Csa01g00072 Chy02g02648 Cme02g02048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003681 2 2 1 2 2 1 2 0 0 2 1 1 1 2 2 2 1 2 2 1 2 2 2 2 2 0 2 2 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00070 Cmo_Chr10 FPKM 6.431925 5.927327 23.019112 20.938513 0.213003 0.265556 0.450151 16.877489 14.541067 13.384926