Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00071 ATGGCTCCGACTGTTCCTATAGAGTTTGCTGGACAGAAGGAATCTCGTAAGTATTCACTCTCACAGGCAATGGGGAAATCGAGGAAATATTCCAAAGGGCTTTCTTTTGGTTTTGTTCCAGATTACCGACATGCTGTGGAAACTGTTGGCGAATCAGAAGGGTTTGGGAGCTCTGGACGAATGGATACTGGAATCTCTACTCTCGATGATTCACGGGCCATTAAGAGGAAACGTGTTAGTATGAATGCAGAGGGTCACGATTGTTTTGGTGCTCCGCTTCAAGTTTTTTCTCTATCAACATTGTCTCGATCTGAAAGGAAGGATTTAGAGATAAGGTTAAAGTTAGAACTTGAGCAGGTTCGGGTGCTGCAAAAGAAAGCTTCTAATGTTAGTTCAATTTTTGCCGTCTCATCATCTTGTAATAATCAGAGCTCCAGTGATCAGCACAGGGTAGCTCCCCCAGAGACTTTTAATAGGTCATCCGAGACAGTTCCTCCTGCTAAAAAGCTACTGCCCTCTGGGCGCAATGGCCCTTCTGCTAAAAGGAGTTCATCTGGGCGTTTTGAGTCGATTAAACCAGTTGTTGTGTCTGCTTCCTCAACAGCGACATTGAAACAATGTGAACAGCTGCTGCAACGTTTGATGTCGCATCAATTTGGTTGGGTTTTTAACACCCCAGTGGATGTGGTTAAATTGAATATTCCAGATTACTTTAATGTTATAAAGCATCCAATGGACTTGGGCACTGTGAAGTCGAAGATTGCTGCAGGAGAATACACACATCCTGTGGATTTTGCTGCCGATGTTCGGCTTACTTTCTCAAATGCGATGACTTACAACCCTCCCGGGAATGATGTCCATACCATGGCTAAGACACTAAGTAAATATTTTGAAGTTAGATGGAGAACTATAGAGAAGAAGCTCCCTGTAACAACTGAAGAACAACGTCAAGTACCTTCAGCCTCAATTGTTCATAAGGAAGCTGAAAGTACTCTGCCCGTGCCACCTTCAAAAAAGACAAAAATACCTACAAATGAACCTGATGTTCAACTAAACACTGTGGTAAAAATCATGACTGACCAGCAGAAGCATAAACTAAGTGTAGAGTTGGAGGCTTTGCTAGGAGAGTTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATTCTCAAGCTGGCGAGGATGAGATTGAAATTGACATCGATGCTCTTAGTGATGATACCTTGTTTGAATTGAGGAAGCTACTGGACGATTATATGGTGGAAAAGCAGGAGCGCACAAAGGTTGAACCATGTGTAGTGGAGCTTCGTAATGAATCTGGCTTTAGCAATTCATCGGTGCCACCTTGTAAAGGTAGAGACGATCCTGTTGACGAGGATGTTGACATTGTTGGTGGAAATGACCCCCCTGTTTCAAGCTATCCTCCAATAGAGATAGAGAAAGATGCCGTCCGTAGAGATAGTAAATGCAGTAATTCCAGTAGCTCGAGTAGTGAATCAGATTCTGGCTCAGAAAGTTTATCGGGAAGTGAATCTAATGCTGCTAAAGCTTTAGATAGTAATGTGGCTCCAAAGGGGTACTGGATGAGTGGTTCTATTGTTATGATGGTATTGAAAATGACCTTTACTGGAACATTGAGGCTAGAACAACTAAATGAAGTAGGGTTTGTTCATTGTGCATGTCAGTGTACTCTTAACTCTATTTCTAATAAAAGCACTGCGAAGAATGAGTTAGCACAAATTTTACTTGAGCTTCCTTCATCTTGTCAGGAAATTTTGTGTTCTGAAACAAATGTGGATCAGAAGCAATGTGAACTTGGAGAAATAGAAATTAGAAATTATGAAGAAAGTGGGACTGGTCTAGTTGAGCAAACCACCCAGGCTAATACAAACACGATTGAGATGGATAGCTACCAAGAGGAGGGGGAGAGTGCTCCATCTAAGAGGCAAGTCTCCCCCGACAGGCTTTACCGTGCAGCTTTATTAAGGAATCGTTTTGCTGACACAATACTGAAAGCTCGAGAAAAGGCTCTTGAAAAGGTTTAA 2052 42.3 MAPTVPIEFAGQKESRKYSLSQAMGKSRKYSKGLSFGFVPDYRHAVETVGESEGFGSSGRMDTGISTLDDSRAIKRKRVSMNAEGHDCFGAPLQVFSLSTLSRSERKDLEIRLKLELEQVRVLQKKASNVSSIFAVSSSCNNQSSSDQHRVAPPETFNRSSETVPPAKKLLPSGRNGPSAKRSSSGRFESIKPVVVSASSTATLKQCEQLLQRLMSHQFGWVFNTPVDVVKLNIPDYFNVIKHPMDLGTVKSKIAAGEYTHPVDFAADVRLTFSNAMTYNPPGNDVHTMAKTLSKYFEVRWRTIEKKLPVTTEEQRQVPSASIVHKEAESTLPVPPSKKTKIPTNEPDVQLNTVVKIMTDQQKHKLSVELEALLGELPESIIDFLKEHSSNSQAGEDEIEIDIDALSDDTLFELRKLLDDYMVEKQERTKVEPCVVELRNESGFSNSSVPPCKGRDDPVDEDVDIVGGNDPPVSSYPPIEIEKDAVRRDSKCSNSSSSSSESDSGSESLSGSESNAAKALDSNVAPKGYWMSGSIVMMVLKMTFTGTLRLEQLNEVGFVHCACQCTLNSISNKSTAKNELAQILLELPSSCQEILCSETNVDQKQCELGEIEIRNYEESGTGLVEQTTQANTNTIEMDSYQEEGESAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKV 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 328504 334350 + CmoCh10G000710.1 Cmo10g00071 389417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00071 683 PRINTS Bromodomain signature 250 268 IPR001487 GO:0005515
Cmo10g00071 683 PRINTS Bromodomain signature 268 287 IPR001487 GO:0005515
Cmo10g00071 683 PRINTS Bromodomain signature 218 231 IPR001487 GO:0005515
Cmo10g00071 683 PRINTS Bromodomain signature 234 250 IPR001487 GO:0005515
Cmo10g00071 683 SMART bromo_6 196 306 IPR001487 GO:0005515
Cmo10g00071 683 Pfam Bromodomain extra-terminal - transcription regulation 358 419 IPR027353 -
Cmo10g00071 683 ProSiteProfiles Bromodomain profile. 215 287 IPR001487 GO:0005515
Cmo10g00071 683 Coils Coil 106 126 - -
Cmo10g00071 683 MobiDBLite consensus disorder prediction 442 517 - -
Cmo10g00071 683 ProSiteProfiles NET domain profile. 348 429 IPR027353 -
Cmo10g00071 683 PANTHER TRANSCRIPTION FACTOR GTE8 46 681 - -
Cmo10g00071 683 CDD Bromo_plant1 203 301 IPR037377 -
Cmo10g00071 683 Pfam Bromodomain 207 291 IPR001487 GO:0005515
Cmo10g00071 683 SUPERFAMILY Bromodomain 184 309 IPR036427 GO:0005515
Cmo10g00071 683 MobiDBLite consensus disorder prediction 139 163 - -
Cmo10g00071 683 Gene3D - 352 428 IPR038336 -
Cmo10g00071 683 Gene3D - 191 320 IPR036427 GO:0005515
Cmo10g00071 683 MobiDBLite consensus disorder prediction 318 345 - -
Cmo10g00071 683 PANTHER GLOBAL TRANSCRIPTION FACTOR GROUP E8-RELATED 46 681 - -
Cmo10g00071 683 MobiDBLite consensus disorder prediction 491 517 - -
Cmo10g00071 683 MobiDBLite consensus disorder prediction 139 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00071 - - - csv:101217420 923.309
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00071 Cmo11g00050 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01355 Cmo-Chr3:10011051 Cmo10g00071 Cmo-Chr10:328504 1.32E-36 dispersed
Cmo07g00146 Cmo-Chr7:800469 Cmo10g00071 Cmo-Chr10:328504 3.31E-36 dispersed
Cmo10g00071 Cmo-Chr10:328504 Cmo16g00307 Cmo-Chr16:1404693 5.54E-58 dispersed
Cmo10g00071 Cmo-Chr10:328504 Cmo11g00050 Cmo-Chr11:209826 0 wgd
Cmo10g00071 Cmo-Chr10:328504 Cmo11g01635 Cmo-Chr11:11627479 1.49E-08 wgd
Cmo10g00071 Cmo-Chr10:328504 Cmo14g00719 Cmo-Chr14:3693032 2.00E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00071 Cmo_Chr10 FPKM 2.861094 2.781882 8.099752 8.227586 62.279015 62.602589 70.039154 11.363345 11.238418 11.988898