Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00081 ATGGTTTCTCAAACATGCACAATGCCAGGTCAAACGACGCCGTTTAAGCTTGCGACTCTCACAACCCCAAACACGAGTTGCCTGGCCGCTCACAACGGGCTCCTCTACTCCGGCTCCACCAACCAAATCGCCGTCTTCGATTTAACCAACTTTACCCAAATCGACACGCTTCGCACTAACGACGCCGCTTCGGGGTCCGTGAAGTCCATCGCTTTTGGGCGTTGGAAAATCTTCACGGCCCACCAGGACTGCAAGATCCGCGTGTGGAAGATCACCTGCTCGAAACGACGACACGGACACCGTCTTCTGGCCACTCTTCCCACCGTTAAGGACAAGCTCTACCGGTTTATTTCGCCGAGTAATTACGTTCATGTACGGCGCCACCACAAGCGGCTGTGGATTGAGCATTGGGATGCGGTTTCTGGGTTGGTGGTTAATGAGGGGTTTGTGTACTCTGTTTCCTGGGATCGGAGTTTTAAGGTTTGGAGTGCTTCCGACCATAAGTGTTTGTCGTCGGTGAAAGCCCACGACGATGCAGTCAACGCGGTTGGTGTGGGTCAGAACGGCGTCGTTTACACTGGCTCTGCCGATGGGGTTATTGGAGTTTGGGAGATCAGGGAGGGGAAGCAAAAAAAGCATAGGCTGGTGAGGACTTTGGACAAGCATAAATCCACGATAAATGCGATCGCATTGAACGAGGGAGGGACGGTGATGTTTTCCGGGAGCAGTGACCGTTCGATAATGGTGTGGAAGAAAGATGAGGCGGGAAAGCAGATTGGGTTTGTGGAGGCTTTATGGGGTCATGAAGGGGCTGTATTGTGCTTGTATAGTGTCCGAGATTTGTTAGTCAGTGGGTCCGAGGATCGGACCGTCAGGATTTGGAGAGGTGACGTCACAAATGGTTATCAATGTACGGCTGTGATGGAAGGACACAGATCGCCGGTGAAGTCGTTGGTCGTGGTCGGAGCCGGTGAACGGTGTTTGATGATCTGTAGTGCCAGTTTGGACGGAGAAATACGAGTTTGGAGTTTGAGGCTTTGA 1041 52.35 MVSQTCTMPGQTTPFKLATLTTPNTSCLAAHNGLLYSGSTNQIAVFDLTNFTQIDTLRTNDAASGSVKSIAFGRWKIFTAHQDCKIRVWKITCSKRRHGHRLLATLPTVKDKLYRFISPSNYVHVRRHHKRLWIEHWDAVSGLVVNEGFVYSVSWDRSFKVWSASDHKCLSSVKAHDDAVNAVGVGQNGVVYTGSADGVIGVWEIREGKQKKHRLVRTLDKHKSTINAIALNEGGTVMFSGSSDRSIMVWKKDEAGKQIGFVEALWGHEGAVLCLYSVRDLLVSGSEDRTVRIWRGDVTNGYQCTAVMEGHRSPVKSLVVVGAGERCLMICSASLDGEIRVWSLRL 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 366994 368226 + CmoCh10G000810.1 Cmo10g00081 389427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00081 346 SUPERFAMILY WD40 repeat-like 25 344 IPR036322 GO:0005515
Cmo10g00081 346 Gene3D - 124 186 IPR015943 GO:0005515
Cmo10g00081 346 SMART WD40_4 13 47 IPR001680 GO:0005515
Cmo10g00081 346 SMART WD40_4 301 343 IPR001680 GO:0005515
Cmo10g00081 346 SMART WD40_4 212 251 IPR001680 GO:0005515
Cmo10g00081 346 SMART WD40_4 119 163 IPR001680 GO:0005515
Cmo10g00081 346 SMART WD40_4 166 204 IPR001680 GO:0005515
Cmo10g00081 346 SMART WD40_4 258 295 IPR001680 GO:0005515
Cmo10g00081 346 SMART WD40_4 50 90 IPR001680 GO:0005515
Cmo10g00081 346 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 16 343 IPR045182 -
Cmo10g00081 346 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 16 343 - -
Cmo10g00081 346 Gene3D - 187 346 IPR015943 GO:0005515
Cmo10g00081 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 294 - -
Cmo10g00081 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 346 IPR001680 GO:0005515
Cmo10g00081 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 294 IPR001680 GO:0005515
Cmo10g00081 346 CDD WD40 27 343 - -
Cmo10g00081 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 173 209 - -
Cmo10g00081 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 346 - -
Cmo10g00081 346 Gene3D - 3 123 IPR015943 GO:0005515
Cmo10g00081 346 ProSitePatterns Trp-Asp (WD) repeats signature. 191 205 IPR019775 -
Cmo10g00081 346 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Cmo10g00081 346 PRINTS G protein beta WD-40 repeat signature 238 252 IPR020472 -
Cmo10g00081 346 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Cmo10g00081 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 251 - -
Cmo10g00081 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 213 IPR001680 GO:0005515
Cmo10g00081 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 251 IPR001680 GO:0005515
Cmo10g00081 346 Pfam WD domain, G-beta repeat 267 294 IPR001680 GO:0005515
Cmo10g00081 346 Pfam WD domain, G-beta repeat 303 343 IPR001680 GO:0005515
Cmo10g00081 346 Pfam WD domain, G-beta repeat 215 251 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00081 - - - csv:101204201 552.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00081 Cmo-Chr10:366994 Cmo18g00721 Cmo-Chr18:9005162 5.58E-112 dispersed
Cmo10g00081 Cmo-Chr10:366994 Cmo04g01891 Cmo-Chr4:9633440 1.55E-113 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g871 . . . . . Bpe13g00263 . . . . . . . . . . . Bhi02g00576 Tan09g2327 Cmetu02g1365 . . . . Cla06g01714 . . Cco06g1956 . . Cre06g2615 . . . . . . . . . . . . . . . . . Cmo10g00081 . . . . . . . . . . . . . . Cla01g01398 Cam01g1460 Cec01g1499 . Clacu01g1484 Cmu01g1379 Cre01g1294 . Csa01g00089 Chy02g02631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00081 Cmo_Chr10 FPKM 0.964461 1.812758 0.910871 0.712424 0.895312 1.134908 1.146377 1.548977 1.298287 1.683617