Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00083 ATGAAAGTGGGCTCCAGCCATCCAATTGTGATCCCGTTTTTCGTTGGAGCCACGCCTATAAAGAAGAAGACCAAGTCTAACACTACTGCCAATTCTTTTGCTTGCCGGCAAACTCCCTTCGCTCGCAGCCGGAAAATGGCTTTACCTTCCCCCAAACTCCTTCCATTCTTAGTTTTTCTCTCCGTCCTTTTCCATGTCCATGCCCGACTGAACATTGATCCTTCAGATCTCAGAGCCTTTTCTATCATCAAGAATAACTTGGGTATTGACGGTCAACTCTCCCCCTACCCATGCGATAACGCCGGTGTATTCTGCGAGAGACGGCTCTCCAGCAACGGCACTTACGTTTTGAGGGTCACCAGGCTCATTGTCAAGTCCAAAGATCTTGCTGGTTCTCTTCCTCCGGCTATCGGCCGGCTATCGGAGCTGAAAGAGCTTACGATTTCTAATAATCAACTCGTTGACCAAGTGCCTGCCCAAATCGTCGACTGCCGGAAATTGGAAGTTCTCGATCTCCAAAACAACCACTTTTCTGGAAAAGTTCCGTCCGGATTGTCCTCGTTGACTCGCCTTCGGGTCATCGATCTTTCGTCCAATAAGTTCTCGGGGAGTTTGGATTTCTTGAAGTATTTTCCCCATTTGGAAAGTCTCTCCATAGCCAACAATTACTTCACGGGGAGAATCCCAGCTTCAATTCGTTCTTTTCGCAATCTTCGAGTCTTCAACTTCTCTGGAAACCCTCTTCTCGAAAGTTCATACCCCATCGTGAAAGGCGTTGAGTTCTACTCAACTACCGAAGTTCCCAAGCGTTATAAGTTATTAGCTGAGAAGTCCAGTACGAAAGGCAATCACAGTGCCGCCGCCACAGCGCCAACTTCGAGTGCTCAAGCTCCATCTCCTGCGGCCTCACCTCCTCATAGGAACCGGAAGAATAAAGCAAAGATAGTACTTGCTTGGATTCTTGGGTTCCTCGCTGGAGCAATTGCTGGAAGTTTGTCAGGGTTTATCTTTTCACTAATGGTTAAACTCATCATAGCAGTTATAAAAGGTGGAAGCAAAAATTCGGGACCCTCAATATTTGCACCTAAGCTTATAAAACGAGAGGATCTGGCTTTTCTAGAGAAAGACGATGCACTAGCATCGCTCGAACTGATTGGAAAAGGTGGATGTGGAGAAGTTTACAAGGCGGAATTACCAGAAAAAAGCGGAAAAATGTTTGCGATTAAGAAGATAACTCAGCCCCCAAAGGACGCGGCTGAGTTAGTTGACGAGGATAGCAGGTTTATGAGCAAGAAAATGCGTCAGATCAAGTCAGAGATCAGAACTGTGGGTGAAATCCGGCATCGTAATCTTCTTCCTCTTGTGGCCCATGTCCCCCGTCCTGATTGCCATTACCTTGTGTACGAGTTGATGAAGAATGGCAGCTTGCAAGATATATTGAATCAGGTTTCGGGAGGAGTGAAAGAACTAGATTGGCTTACTCGGCATAACATCGCTCTCGGAGTGGCATCTGGGCTGGAGTATCTTCACATGAACCATACCCCGCGTATTATTCACAGGGATCTGAAGCCTGCAAATGTTTTGCTTGATGACGACATGGAAGCTCGAATTGCTGATTTTGGGCTGGCAAAAGCAATGCCAGATGCCCAAACTCACATGACAGCTTCAAATGTTGCAGGTACCGTAGGATACATCGCACCAGAGTATCATCAGACCTTGAAGTTCACTGATAAGTGCGATATATACGGCTTTGGGGTTCTGCTTGGTGTCTTGGTGATCGGGAAACTTCCATCTGATGAGTTTTTCCAGGACACGGATGAGATGAGTTTGGTTAAGTGGATGAAGAATATGATGACTTCGGATAATCCTAGGAGAGCCATTGATCCGAAGCTCCTGGGAAATGGCTGGGAGGAGCAAATGCTCTTGGCCCTCAAAATTGCCTGCTTTTGCACTATGGATAATCCAAAAGAGAGGCCTAACAGTAAGGATGTCAGATGCATGCTGTCACAGATCAAGCACGATGTACTTGAAACTTCCTCTCTAAACGTCTAA 2052 46.54 MKVGSSHPIVIPFFVGATPIKKKTKSNTTANSFACRQTPFARSRKMALPSPKLLPFLVFLSVLFHVHARLNIDPSDLRAFSIIKNNLGIDGQLSPYPCDNAGVFCERRLSSNGTYVLRVTRLIVKSKDLAGSLPPAIGRLSELKELTISNNQLVDQVPAQIVDCRKLEVLDLQNNHFSGKVPSGLSSLTRLRVIDLSSNKFSGSLDFLKYFPHLESLSIANNYFTGRIPASIRSFRNLRVFNFSGNPLLESSYPIVKGVEFYSTTEVPKRYKLLAEKSSTKGNHSAAATAPTSSAQAPSPAASPPHRNRKNKAKIVLAWILGFLAGAIAGSLSGFIFSLMVKLIIAVIKGGSKNSGPSIFAPKLIKREDLAFLEKDDALASLELIGKGGCGEVYKAELPEKSGKMFAIKKITQPPKDAAELVDEDSRFMSKKMRQIKSEIRTVGEIRHRNLLPLVAHVPRPDCHYLVYELMKNGSLQDILNQVSGGVKELDWLTRHNIALGVASGLEYLHMNHTPRIIHRDLKPANVLLDDDMEARIADFGLAKAMPDAQTHMTASNVAGTVGYIAPEYHQTLKFTDKCDIYGFGVLLGVLVIGKLPSDEFFQDTDEMSLVKWMKNMMTSDNPRRAIDPKLLGNGWEEQMLLALKIACFCTMDNPKERPNSKDVRCMLSQIKHDVLETSSLNV 683
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 371698 373749 - CmoCh10G000830.1 Cmo10g00083 389429
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00083 683 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 51 673 - -
Cmo10g00083 683 Gene3D Ribonuclease Inhibitor 75 186 IPR032675 -
Cmo10g00083 683 MobiDBLite consensus disorder prediction 278 308 - -
Cmo10g00083 683 Gene3D Ribonuclease Inhibitor 187 257 IPR032675 -
Cmo10g00083 683 Gene3D Transferase(Phosphotransferase) domain 1 471 681 - -
Cmo10g00083 683 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Cmo10g00083 683 Pfam Protein kinase domain 382 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00083 683 MobiDBLite consensus disorder prediction 278 301 - -
Cmo10g00083 683 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 51 673 - -
Cmo10g00083 683 Gene3D Phosphorylase Kinase; domain 1 371 470 - -
Cmo10g00083 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Cmo10g00083 683 ProSiteProfiles Protein kinase domain profile. 379 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00083 683 SUPERFAMILY L domain-like 92 251 - -
Cmo10g00083 683 SMART serkin_6 379 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00083 683 SUPERFAMILY Protein kinase-like (PK-like) 379 670 IPR011009 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo10g00083 Cmo11g00061 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01703 Cmo-Chr6:11731134 Cmo10g00083 Cmo-Chr10:371698 2.54E-55 dispersed
Cmo10g00083 Cmo-Chr10:371698 Cmo02g01759 Cmo-Chr2:10066921 3.41E-09 dispersed
Cmo14g01437 Cmo-Chr14:11695819 Cmo10g00083 Cmo-Chr10:371698 6.26E-58 dispersed
Cmo10g00083 Cmo-Chr10:371698 Cmo11g00061 Cmo-Chr11:290504 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74591 PF00069 Pkinase 5.90E-42 CL0016 Cmo PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00083 - - csv:101220500 1067.37