Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00085 ATGGCTTCTTCTTCAGCCACTTCAATTTTGAAGCCCTTATCCAAGGCAGATTCTTGCCTTCTCTCCTTGCCTTCTCTCTTCACCTGCAGACCCCCGCACTCTTTTCTCTCTTTCCCTTCCAAATTCACCACCGCCCCCTTCCATCTTTCCTCTTCTCATTGTTCTTCTCTCTTTTCCTCCTCGAAGAAGAAGACACATCTCTCATCGCTAGTTGCCTCTGTAGCCCAGTCTTCGGAGTGGGGCCAAGAAGACGATACCATCACCATTGACCCAAAACTCAGCGGCGACGAGGATGGCGAAGAAGGCCCTCATTGGGAAAATCAAGAGCTCAGTGAGAATGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGGGAAGGCGAAGATGATGGAGGAAGTGAGGGTGAAGGAGGAGGAGTTTTGGAGCTGGGAGACGAGGAAGAAGGCCCTTTGGAGGAGCCAAATGAAGACGCTAAATTGTATGTTGGGAATTTGTCATATGACGTTGATAGTCAAAAGCTTGCAATGCTGTTTGAGAAGGCTGGAACTGTCGAGATTGCTGAGGTGAGATTCCAGAGTTCGGTTATTTACGACCGACAATCAGATCGGAGTCGTGGTTTCGGTTTTGTGACAATGAGTAGTGTCGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGAGTTCTTGGGGAGGCCGTTGGTTGTTAATAAGGCTGCCGCCAGAGGTTCAAGGCCAGAACGCCAACCTCGAACATTTCAACCAGCTTTCAGAATCTATGTTGGTAATCTTGCATGGGAAGTAGACAGTGCACGCCTGGAGCAGGTCTTCAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTCGTGACCATGGCCGACGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTGTAGATGGAAGGGCAATCAGAGTGAATGTTGCAGAGGAAAAACCAAGGCGCAATTTCTGA 1026 49.12 MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSSSKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDWEGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKAGTVEIAEVRFQSSVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRPLVVNKAAARGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 378908 380841 - CmoCh10G000850.1 Cmo10g00085 389431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00085 341 SUPERFAMILY RNA-binding domain, RBD 153 251 IPR035979 GO:0003676
Cmo10g00085 341 CDD RRM_HP0827_like 258 334 - -
Cmo10g00085 341 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 234 IPR000504 GO:0003723
Cmo10g00085 341 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 329 IPR000504 GO:0003723
Cmo10g00085 341 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 335 IPR000504 GO:0003723
Cmo10g00085 341 MobiDBLite consensus disorder prediction 74 155 - -
Cmo10g00085 341 CDD RRM_HP0827_like 158 239 - -
Cmo10g00085 341 PANTHER OS02G0815200 PROTEIN 1 340 - -
Cmo10g00085 341 SUPERFAMILY RNA-binding domain, RBD 250 339 IPR035979 GO:0003676
Cmo10g00085 341 Gene3D - 246 340 IPR012677 -
Cmo10g00085 341 Gene3D - 88 245 IPR012677 -
Cmo10g00085 341 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 241 IPR000504 GO:0003723
Cmo10g00085 341 MobiDBLite consensus disorder prediction 85 120 - -
Cmo10g00085 341 SMART rrm1_1 258 331 IPR000504 GO:0003723
Cmo10g00085 341 SMART rrm1_1 158 237 IPR000504 GO:0003723
Cmo10g00085 341 MobiDBLite consensus disorder prediction 121 152 - -
Cmo10g00085 341 PANTHER RIBONUCLEOPROTEIN 1 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00085 - - - mcha:111006981 466.848
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00085 Cmo11g00064 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00376 Cmo-Chr6:1828141 Cmo10g00085 Cmo-Chr10:378908 2.66E-54 dispersed
Cmo10g00085 Cmo-Chr10:378908 Cmo14g00205 Cmo-Chr14:923478 5.61E-47 dispersed
Cmo06g01730 Cmo-Chr6:11864477 Cmo10g00085 Cmo-Chr10:378908 1.74E-06 transposed
Cmo10g00085 Cmo-Chr10:378908 Cmo11g00064 Cmo-Chr11:301615 3.28E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00085 Cmo_Chr10 FPKM 0.715816 1.454094 0.0 0.0 0.289868 0.215638 0.158946 0.071033 0.0 0.0