Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00088 ATGGAGGGAGGGAAGTGGAGTCTTCAATCAGAATTATTTTGGCTGCGCGGGAATCTTCCTGGAAATTCATCATTGCCAAGTACCAATTCTTCTAAAACTTGCTTTCCTGCCCATGAGCTTCATCACCTAATTTCATCTCCTTTTTTTGTTTCAATCGTATCGGTGCTTCTGTTGTTCATTGTTCTTCAAGAATTGCTCTGGTTCGCACTCTTGACTCGCAGCAGATTCTCCGGCTCTAGTTCTTGTAAAGTGATGGGTGGGAAAAGTTCTAAGCCTGGAAGTTCAAGACGCCATTCGTCTAGTCGGTCTAACTCACAGCAATGGAGTAATTACAATTATCCGGGGTCGCCATATAATCAACCAAGGCCACAGTATCAGTTTGCACCTCCAACTCCAAGCTATGGTGGAACTCAGGCCCCTGAGACAAGAAAGAGGCTGGAGAGGAAGTATTCAAGGATAGATGATAACTATAATAGTCTTGAGCAGGTTACCGAGGCATTGGCTCGTGCAGGCCTCGAGTCTTCGAATCTTATCGTTGGTATAGATTTCACAAAGAGCAATGAGTGGACAGGAGCAAGATCATTTAACCGTAGAAGTTTGCATCACATTGGAGATGAGCAAAATCCCTATGAACAAGCAATATCAATTATTGGGAAAACATTATCTTCCTTTGATGAAGATAATTTGATTCCTTGCTTTGGTTTTGGAGATGCATCGACTCATGACCAAGAGGTTTTCAGCTTTTATCCAGACGATCGAGTTTGTATTGGATTCGAAGAAGTGTTGGATAGATATAGGGAACTTGTGCCTCATCTTCGACTTGCAGGACCAACATCATTTGCTCCTATTATCGAAATGGGTATCACAATTGTAGAGCAAAGTGGTGGCCAATATCATGTATTGGTAATAATAGCTGATGGTCAGGTTACAAGAAGTGTTGATACAGAGGGTGGACAGTTTAGCCCACAGGAAAAGAAAACCATTGAAGCAATTGTGAAAGCTAGTGCATACCCCCTGTCGATTATACTGGTCGGAGTAGGGGATGGACCTTGGGACATGATGAGGGAATTTGACGACAATATCCCGGCTCGAGCCTTTGATAATTTCCAATTTGTGAACTTCACAAATATAATGTTGAAAAATATGGATCGAGCTCGAAAGGAAACGGAATTTGCTCTAGCAGCACTCATGGAAATACCCTCCCAGTATAAAGCAACACTGGAGCTTGATATTTTGGGTGCCAGCAGAGGGAAGGAAATCGACCGATTTCCTCTTCCCCCTCCTCGCTATGGTCCTAGTTTCCAAAAGACCTCTAACTCGAGCAGTTCTCGCCCAATGCCACACTCATTTGCTGGAGTTGCTCCTGTCCGATCTGCACCTCCTCTAAGTTCGGTTCCTGATGCCCATGCTTGCCCCATTTGCATCTCCAATGCAAAAAATATGGCTTTTGGTTGTGGACATCAGACATGCTGTGAATGTGGACAGGATCTTCAGTTGTGCCCCATATGCCGCAGCTTTATTGAAACTAAGATAAAGCTTTATTAG 1545 43.69 MEGGKWSLQSELFWLRGNLPGNSSLPSTNSSKTCFPAHELHHLISSPFFVSIVSVLLLFIVLQELLWFALLTRSRFSGSSSCKVMGGKSSKPGSSRRHSSSRSNSQQWSNYNYPGSPYNQPRPQYQFAPPTPSYGGTQAPETRKRLERKYSRIDDNYNSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDDRVCIGFEEVLDRYRELVPHLRLAGPTSFAPIIEMGITIVEQSGGQYHVLVIIADGQVTRSVDTEGGQFSPQEKKTIEAIVKASAYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTNIMLKNMDRARKETEFALAALMEIPSQYKATLELDILGASRGKEIDRFPLPPPRYGPSFQKTSNSSSSRPMPHSFAGVAPVRSAPPLSSVPDAHACPICISNAKNMAFGCGHQTCCECGQDLQLCPICRSFIETKIKLY 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 389396 394206 - CmoCh10G000880.1 Cmo10g00088 389434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00088 514 MobiDBLite consensus disorder prediction 432 447 - -
Cmo10g00088 514 Pfam Copine 199 412 IPR010734 -
Cmo10g00088 514 PANTHER COPINE FAMILY PROTEIN 1 85 514 - -
Cmo10g00088 514 MobiDBLite consensus disorder prediction 425 450 - -
Cmo10g00088 514 MobiDBLite consensus disorder prediction 78 122 - -
Cmo10g00088 514 SMART VWA_4 174 377 IPR002035 -
Cmo10g00088 514 Coils Coil 143 163 - -
Cmo10g00088 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 459 514 IPR013083 -
Cmo10g00088 514 CDD RING-HC_RGLG_plant 471 514 IPR045317 GO:0061630|GO:0070534
Cmo10g00088 514 Pfam Zinc finger, C3HC4 type (RING finger) 469 508 - -
Cmo10g00088 514 MobiDBLite consensus disorder prediction 78 143 - -
Cmo10g00088 514 SUPERFAMILY RING/U-box 463 508 - -
Cmo10g00088 514 PANTHER RING-FINGER PROTEIN 85 514 - -
Cmo10g00088 514 SUPERFAMILY vWA-like 176 358 IPR036465 -
Cmo10g00088 514 ProSiteProfiles Zinc finger RING-type profile. 471 504 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00088 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101221610 751.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00088 Cmo-Chr10:389396 Cmo18g00725 Cmo-Chr18:9022257 0 dispersed
Cmo02g00674 Cmo-Chr2:4239599 Cmo10g00088 Cmo-Chr10:389396 2.27E-139 transposed
Cmo10g00088 Cmo-Chr10:389396 Cmo11g00065 Cmo-Chr11:304819 1.02E-54 wgd
Cmo10g00088 Cmo-Chr10:389396 Cmo14g00698 Cmo-Chr14:3595991 8.85E-180 wgd
Cmo10g00088 Cmo-Chr10:389396 Cmo04g02800 Cmo-Chr4:20118369 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g862 . . . . . . . . . . Cma10g00087 . Car10g00077 Car11g00057 . . Cpe04g01589 Bhi02g00592 . . . Hepe09g0092 . . Cla06g01707 Cam06g1895 Cec06g1944 Cco06g1948 Clacu06g1851 Cmu06g1792 Cre06g2607 . . Cone13ag0185 Cone19ag0178 . . . . . . . . . . . . . Cmo10g00088 . . . . . . . . . . . . . . . . . . . . . Lsi06g01600 Csa01g00097 Chy02g02625 Cme02g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00088 Cmo_Chr10 FPKM 1.810304 1.834907 9.012375 8.408999 28.851263 32.133347 28.914408 7.010861 5.886968 6.250659