Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00089 ATGGAAGCTCTGGCGCTTCCTTCTATGAATTCTCTCACCATTTCCTGTTCTAATTTGCAGAAAGGGAGTTTCGCCAACTTGCCCGGAACACTGCATCACTGTAAATTTTACGGGCAATCTACCTTGAAGTTCAGGCCCCTTCATGGTACCCGCCACTATTCCAATGTTATCAAAATGCAAAGTGACAGTGAAGACTATGAGCTGAAGCAAATGAGGGACATGGCTGCAGCTAAAAAGAGATGGGACTCTCTGATTCGGGAGGGCAAAGTGAAAGTTCTGACGCCAAGGGAAGCTGGTTATGCCATTCAACTCTCTGATAAGACATTGCTTGATGTGCGTCCTTCTACAGAACACCAAAAGGCATGGGTTAAAGGCTCAACATGGATCCCAATCTTTGAAGTTGATGACAAAGTTGATCCTGGAACTCTTTCTCGAAAGGTCACAAGCTTCATGATGGGGGGTTGGTGGAGTGGTGTGCCTACGGTATCCTACAATAGCCGCTTCTTGTCAGAAGTTCAAGAGAAATTTCCAAAAGATGCTGACCTTATTCTTGCATGTCAAAAGGGATTGAGGTCCCTAGCTGCATGCGAGCTCCTCTACAATGCTGGTTACAAAAACCTCTTCTGGGTTCAAGGGGGTCTAGACGCTGCTGAAGAAGAGGATCTGGCCAGAGAAGGTCCTCAGCCTTTAAAATTTGCTGGGATTGGTGGGCTCTCAGAATTCCTTGGCTGGACCGATCAACAAAGGGTGGCTGGTGCCAAAGAAGGTTGGGGTTATCGCTTGGTTTACTCTGCTCGTCTGATTGCAGTCTTCCTTGCTGCTGATGCCCTGTTTATTGGCGCTCAGCAATTGGGTCGCTATATTCAAGACTTGCGGTCTCACTAA 885 47.23 MEALALPSMNSLTISCSNLQKGSFANLPGTLHHCKFYGQSTLKFRPLHGTRHYSNVIKMQSDSEDYELKQMRDMAAAKKRWDSLIREGKVKVLTPREAGYAIQLSDKTLLDVRPSTEHQKAWVKGSTWIPIFEVDDKVDPGTLSRKVTSFMMGGWWSGVPTVSYNSRFLSEVQEKFPKDADLILACQKGLRSLAACELLYNAGYKNLFWVQGGLDAAEEEDLAREGPQPLKFAGIGGLSEFLGWTDQQRVAGAKEGWGYRLVYSARLIAVFLAADALFIGAQQLGRYIQDLRSH 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 395692 399768 + CmoCh10G000890.1 Cmo10g00089 389435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00089 294 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC 1 293 IPR044664 -
Cmo10g00089 294 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 87 224 IPR036873 -
Cmo10g00089 294 Gene3D - 90 258 IPR036873 -
Cmo10g00089 294 ProSiteProfiles Rhodanese domain profile. 103 226 IPR001763 -
Cmo10g00089 294 SMART rhod_4 93 223 IPR001763 -
Cmo10g00089 294 Pfam Rhodanese-like domain 105 216 IPR001763 -
Cmo10g00089 294 CDD RHOD 108 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00089 - - - csv:101221836 535.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00089 Cmo-Chr10:395692 Cmo14g00061 Cmo-Chr14:300253 4.23E-33 dispersed
Cmo10g00089 Cmo-Chr10:395692 Cmo03g00703 Cmo-Chr3:6110681 5.15E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g860 . . Bda06g00622 . . . . Bma12g01059 . . Cma10g00088 . Car10g00078 . . . . Bhi02g00594 . . . . . . Cla06g01706 Cam06g1894 Cec06g1943 Cco06g1947 Clacu06g1850 Cmu06g1791 Cre06g2606 . Cone16ag0063 . . . . . . . . . . . . . . . Cmo10g00089 . . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01599 Csa01g00099 Chy02g02624 Cme02g02022
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo16g00396 . 59 376 Sulfurtransferasese/Rhodanese AT1G79230 73.9 1.2e-145 513.5
Cmo04g00550 . 59 378 Sulfurtransferasese/Rhodanese AT1G79230 74.4 4.4e-145 511.5
Cmo16g00396 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 72.5 8.2e-113 404.1
Cmo04g00550 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 72.5 9.0e-112 400.6
Cmo13g01091 . 79 355 Sulfurtransferasese/Rhodanese AT5G23060 59.4 1.2e-86 317.4
Cmo06g01047 CST 430 803 Sulfurtransferasese/Rhodanese AT4G01050 56.7 1.8e-105 380.6
Cmo11g01284 . 6 609 Sulfurtransferasese/Rhodanese AT1G09280 63.5 2.7e-222 768.8
Cmo04g01124 . 86 450 Sulfurtransferasese/Rhodanese AT2G40760 73.1 1.4e-155 547.0
Cmo03g00106 . 61 259 Sulfurtransferasese/Rhodanese AT2G42220 75.4 2.4e-84 309.3
Cmo14g00061 . 35 213 Sulfurtransferasese/Rhodanese AT3G08920 64.2 7.9e-66 247.7
Cmo10g00089 . 1 294 Sulfurtransferasese/Rhodanese AT4G24750 66.7 5.8e-112 401.4
Cmo02g01321 . 67 249 Sulfurtransferasese/Rhodanese AT5G19370 63.6 1.6e-64 243.8
Cmo16g00940 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 64.9 4.3e-133 471.9
Cmo16g00036 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.6 8.5e-79 290.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011200 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00089 Cmo_Chr10 FPKM 2.246169 1.45879 0.576224 0.661193 0.197105 0.487715 0.203536 0.064578 0.013205 0.093878