Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00093 ATGGCGGCTATTTCCTTAGCTTCCGCTTCTACATCCTCTAACCTCCTTTTCCTGCATGCCTCTGCTTCTCCCTCTTCCTCCCCTTCTTCTTCCCTCTTCGTCAAACCCTCCTCCTCCTCCTCCTCCGCTATTAAGCTTTCTTCCTCTTTCTTGAACCCTTCTTCTATTCGCCCTCTCACATTCTCCTCCCCCGCTGTAAAACCTCCTCGTTCCTTGACGATTCGGGCCGCCCGTGGGAAATTTGAGAGGAAGAAACCCCATGTCAATATCGGCACAATTGGGCATGTCGACCATGGTAAAACCACGCTCACCGCTGCTTTGACAATGGCTTTGAGCAAAGCCCCAAAGAAATATGACGAAATTGACGCCGCACCTGAAGAGCGAGCTCGGGGTATTACGATAAACACCGCCACCGTTGAGTACGAAACTGAGAGCCGACATTACGCCCACGTCGATTGCCCTGGCCATGCTGATTACGTCAAGAACATGATTACTGGTGCTGCTCAAATGGATGGCGCAATTTTGGTGGTTTCGGGCGCTGATGGCCCAATGCCACAAACGAAGGAGCATATTTTGTTGGCTAAACAAGTGGGTGTCCCCAATATGGTGGTGTTTCTCAACAAGAAGGATCAAGTTGATGACGAGGAGCTTCTGGAGCTTGTGGAATTGGAAATGCGTGAGTTGCTTTCTTCCTATGAATTCCCTGGTGATGATGTCCCAATTATTGCTGGTTCTGCTTTGTTAGCTTTGGAAGCTCTAATGGCTAACCCTGGTATTGTTAGAGGCGAAAATGAATGGGTGGATAAAATTTTTGAACTTATGGATGCTGTTGATAGCTACATTCCAATACCCGAAAGACAAACAGATCTTCCATTTTTGCTTGCTGTTGAAGATGTGTTCTCTATTACTGGTCGTGGTACTGTGGCGACGGGGCGTGTCGAAAGGGGCACGGTTAGGGTGGGAGAAACAGTGGATATTGTAGGACTAAGGGAAACTAGAAACACAACAGTGACAGGAGTGGAGATGTTTCAGAAAATTCTCGACGAGGCTTTGGCTGGGGATAATGTAGGGCTGTTGCTTAGAGGCGTTCAGAAGGCTGACATCCAAAGAGGGATGGTTCTAGCCAAGCCTGGCACTATCACCCCACACACCAAGTTTCTTGCAGTTGTGTATGTGTTGAAGAAGGAGGAGGGTGGTAGACATTCACCCTTTTTTGCCGGTTACAGACCGCAATTTTACATGAGAACGACCGATGTCACAGGTAAGGTGACTTCGATTATGAACGACAAGGACGAGGAGTCGAAAATGGTGATGCCGGGTGACCGAGTTAAAATGGTTGTGGAACTGATTATGCCAGTGGCTTGTGAACAAGGAATGAGATTTGCCATCAGAGAAGGTGGAAAGACTGTAGGAGCTGGTGTGATTCAATCAATAATTGAGTGA 1443 47.89 MAAISLASASTSSNLLFLHASASPSSSPSSSLFVKPSSSSSSAIKLSSSFLNPSSIRPLTFSSPAVKPPRSLTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALSKAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKKDQVDDEELLELVELEMRELLSSYEFPGDDVPIIAGSALLALEALMANPGIVRGENEWVDKIFELMDAVDSYIPIPERQTDLPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVDIVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAVVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 404853 406295 + CmoCh10G000930.1 Cmo10g00093 389439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00093 480 Gene3D Translation factors 287 415 - -
Cmo10g00093 480 TIGRFAM EF-Tu: translation elongation factor Tu 77 480 IPR004541 GO:0003746|GO:0005525|GO:0006414
Cmo10g00093 480 CDD EF_Tu 86 284 IPR041709 -
Cmo10g00093 480 PANTHER ELONGATION FACTOR TU-RELATED 41 480 - -
Cmo10g00093 480 CDD EFTU_II 292 378 IPR033720 -
Cmo10g00093 480 Hamap Elongation factor Tu [tuf]. 76 480 IPR004541 GO:0003746|GO:0005525|GO:0006414
Cmo10g00093 480 CDD EFTU_III 381 475 - -
Cmo10g00093 480 Pfam Elongation factor Tu GTP binding domain 85 282 IPR000795 GO:0003924|GO:0005525
Cmo10g00093 480 Pfam Elongation factor Tu domain 2 306 374 IPR004161 GO:0005525
Cmo10g00093 480 Gene3D Translation factors 419 479 - -
Cmo10g00093 480 Pfam Elongation factor Tu C-terminal domain 379 478 IPR004160 -
Cmo10g00093 480 TIGRFAM small_GTP: small GTP-binding protein domain 88 218 IPR005225 GO:0005525
Cmo10g00093 480 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 122 137 IPR031157 -
Cmo10g00093 480 Gene3D - 77 284 IPR027417 -
Cmo10g00093 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 300 IPR027417 -
Cmo10g00093 480 SUPERFAMILY Translation proteins 286 382 IPR009000 -
Cmo10g00093 480 PANTHER ELONGATION FACTOR TU 41 480 - -
Cmo10g00093 480 PRINTS GTP-binding elongation factor signature 89 102 IPR000795 GO:0003924|GO:0005525
Cmo10g00093 480 PRINTS GTP-binding elongation factor signature 129 137 IPR000795 GO:0003924|GO:0005525
Cmo10g00093 480 PRINTS GTP-binding elongation factor signature 149 159 IPR000795 GO:0003924|GO:0005525
Cmo10g00093 480 PRINTS GTP-binding elongation factor signature 165 176 IPR000795 GO:0003924|GO:0005525
Cmo10g00093 480 PRINTS GTP-binding elongation factor signature 202 211 IPR000795 GO:0003924|GO:0005525
Cmo10g00093 480 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 85 285 IPR000795 GO:0003924|GO:0005525
Cmo10g00093 480 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 379 479 IPR009001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00093 K02358 tuf, TUFM; elongation factor Tu - csv:101202988 824.698
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00093 Cmo11g00067 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00359 Cmo-Chr8:2226167 Cmo10g00093 Cmo-Chr10:404853 1.47E-176 dispersed
Cmo10g00093 Cmo-Chr10:404853 Cmo17g01132 Cmo-Chr17:9225831 0 dispersed
Cmo10g00093 Cmo-Chr10:404853 Cmo11g00067 Cmo-Chr11:316878 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g834 Blo04g00717 . . . . . Bma06g00224 . . . Cma10g00090 Cma11g00064 Car10g00079 Car11g00058 Sed08g0074 . Cpe04g01586 Bhi02g00598 Tan09g2310 Cmetu02g0003 . . . . Cla06g01704 Cam06g1892 Cec06g1941 Cco06g1945 Clacu06g1848 Cmu06g1789 Cre06g2604 Cone2ag0932 Cone16ag0071 . . . . . . . . . . . Bpe15g00654 Bma03g00766 . . Cmo10g00093 Cmo11g00067 . . . . . Cpe18g00872 . . . . . . . . . . . . . . Lsi06g01592 . . Cme02g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006341 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00093 Cmo_Chr10 FPKM 22.063177 24.401457 21.062635 19.449293 17.837334 16.225479 16.603313 28.626162 29.058231 28.738127