Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00099 ATGGAACGACAACGGCGGCGACGACGACGATCTCTGTTACTTCTACTTCAGCTCTGTATCTTCTTCATCCTTTTCTTTCCCTCTTACGCAGTTGATTTCATCTTCAATTCGTTCACAAACGGCTCGAATGGCACCGACATCATTCTCATTAGCGACGCGAGGTTCGATTCCCCTGTAATTCGTCTTAATAATGACTCAAACCCAAATTCAATCGGGCGAGCTTTCTATCACACGAAGCTGATTATGAAACCCACTTCGAATTCGACTACGATCTCTTCTTTTTCAACTACTTTCGTGTTTTCAATTTTGCTGGAAGTCGCTACTAGTCCAGGCTTCGGTATGGCCTTCGTTCTTTCCAATTCCACTTCCCCTCCCGACGTCATAGCGGGTCAATACTTCGGTCTCTTCACAAATTCCACTACCCATGTTGTTGCTCCGCTTCTCGCCGTTGAATTCGACACCGGTCGAAACACGGAGTTCAACGATCCCGATGATAGCCATATCGGAATCGATTTGAACAGTATGTTGTCGATAAAAACACAGACCGCTGGGTATTTTGACCCTAATGGAACTTTTGTTCCAATTCAGATGAGAAATGGGCAGAACCTTCGCGCTTGGATCGAGTTTGATGGGTCCAATTTCGAAATCAATGTCACGATTGCCCCAATTGGAATTCCTCGTCCATCCAAACCCACTTTGAGTTTTAGGGATCCTGAAATAGCAAATTATGTATCGAATGAAATGTTTGTGGGATTTTCAGCGTCGAAGACAAAATGGGTTGAGGCGCAGAGGATTTTGGCTTGGAGTTTTAGTGACACTGGTGTTGCTAGAGAGATTAACAACACGAATTTCCCTGTGTTTATGAGAGCATCACCACCGTCTTCCTTGTCGCCGGGATCTGTTGCCGGTATTGTAATCGGCAGTGTTGTGTTTGTGATCTTAATTTCTGGATTTGTGGGGTTTTGGTATTGGCGAAAGAACAGAGCAAGTGAAGAAGATGAAATTGAGGATTGGGAGCTCGAATATTGGCCTCACAGATTCTCTAATGAGGAGCTTTCACAGGCCACTGATGAATTTTCGGATAAGAATCTGTTGGGTTCCGGTGGATTTGGAAGAGTATTCAAAGGAACTTTACCAAACAACACGGAAATCGCCGTAAAGTGTGTAAATCACGATTCAAAACAGGGGTTAAAGGAATTCATGGCGGAAATCTCGAGCATGGGTAGGCTTCAACATAAAAATCTAGTCCAAATGCGAGGATGGTGTCGAAAAGGCAATGAATTAATGTTGGTATACGATTACATGCCGAATGGAAGCCTTAATCGGTGGATTTTCGACAAACCCACAACGCTACTCGGCTGGAAACAGCGCCGCCGTGTGCTCGCTGACGTTGCAGAGGGTTTGAACTATCTCCACCATGGTTGGGACCAAGTGGTGATTCACAGAGACATAAAATCAAGCAACGTGTTAATGGATTCGGAAATGAGAGGCAGACTGGGCGATTTTGGGCTGGCAAAACTGTACCAACACGGCGAGACTCCAAATACCACTCGCGTCGTTGGGACCTTGGGGTATTTAGCGCCGGAGATTGCAACGGTGGCTACTCCGACGGCGGCCAGCGATGTGTATAGTTTTGGGGTTGTGATTCTTGAAGTAGCATGTGGGCGGCGACCGATTGAGATGGCAGTGGAGGAAGAAGAAATGGTACTTATAGATTGGGTGAGGGATCTTTACTCCGCCGGACGGTTGATTGCGGCGGCGGACTTGAGAATCAGAGAGGAATATGAAACAGAGGAGATGGAGTTGATGTTGAAGCTTGGTTTAGCTTGTTGTCATCCGGACCCTGAACGGCGGCCGACAATGAGGGAGGTTGTGGCTGTTTTGATTGGAGAACAACAGGCAGCTGAGTCAGTGGAACTTTTGTCGGGATTGTCCGGCGGCGCTGTTGATGGCAGCCCAGAAGTTTGA 1968 46.8 MERQRRRRRRSLLLLLQLCIFFILFFPSYAVDFIFNSFTNGSNGTDIILISDARFDSPVIRLNNDSNPNSIGRAFYHTKLIMKPTSNSTTISSFSTTFVFSILLEVATSPGFGMAFVLSNSTSPPDVIAGQYFGLFTNSTTHVVAPLLAVEFDTGRNTEFNDPDDSHIGIDLNSMLSIKTQTAGYFDPNGTFVPIQMRNGQNLRAWIEFDGSNFEINVTIAPIGIPRPSKPTLSFRDPEIANYVSNEMFVGFSASKTKWVEAQRILAWSFSDTGVAREINNTNFPVFMRASPPSSLSPGSVAGIVIGSVVFVILISGFVGFWYWRKNRASEEDEIEDWELEYWPHRFSNEELSQATDEFSDKNLLGSGGFGRVFKGTLPNNTEIAVKCVNHDSKQGLKEFMAEISSMGRLQHKNLVQMRGWCRKGNELMLVYDYMPNGSLNRWIFDKPTTLLGWKQRRRVLADVAEGLNYLHHGWDQVVIHRDIKSSNVLMDSEMRGRLGDFGLAKLYQHGETPNTTRVVGTLGYLAPEIATVATPTAASDVYSFGVVILEVACGRRPIEMAVEEEEMVLIDWVRDLYSAGRLIAAADLRIREEYETEEMELMLKLGLACCHPDPERRPTMREVVAVLIGEQQAAESVELLSGLSGGAVDGSPEV 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 425577 427544 + CmoCh10G000990.1 Cmo10g00099 389445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00099 655 SUPERFAMILY Protein kinase-like (PK-like) 336 628 IPR011009 -
Cmo10g00099 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Cmo10g00099 655 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 288 IPR013320 -
Cmo10g00099 655 CDD lectin_legume_LecRK_Arcelin_ConA 31 274 IPR001220 GO:0030246
Cmo10g00099 655 Gene3D Transferase(Phosphotransferase) domain 1 435 641 - -
Cmo10g00099 655 Gene3D - 29 288 - -
Cmo10g00099 655 ProSitePatterns Legume lectins beta-chain signature. 148 154 IPR019825 -
Cmo10g00099 655 SMART serkin_6 359 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00099 655 Pfam Legume lectin domain 31 283 IPR001220 GO:0030246
Cmo10g00099 655 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Cmo10g00099 655 PANTHER - 14 644 - -
Cmo10g00099 655 Gene3D Phosphorylase Kinase; domain 1 321 434 - -
Cmo10g00099 655 Pfam Protein kinase domain 360 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00099 655 CDD STKc_IRAK 365 628 - -
Cmo10g00099 655 ProSiteProfiles Protein kinase domain profile. 359 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00099 655 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.1 14 644 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00099 Cmo-Chr10:425577 Cmo14g00123 Cmo-Chr14:542648 5.29E-171 dispersed
Cmo10g00099 Cmo-Chr10:425577 Cmo03g00426 Cmo-Chr3:4932837 1.09E-173 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74593 PF00069 Pkinase 9.30E-52 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00099 - - cmo:103502376 1115.14