Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00100 ATGTATAAATTCACGACACAAACCCAAACCCCAAATAGCCAAACAGAAAACAGAGGACGGATAATCTCAAATATGAATAGAAATCATAAGGCAAGAGCCGTTCTTCTTACTGCTATCGAAGTGTTCATGATTCTTCTATGTGCTGGTTGGGTTTCTCTGTGGCTATTGAAACCCACAGATCTCTGGACAAGAAAATGGCGTGTTGCTGAAAACACTGCCCGAGCATCTGTATTTGGATACTATGGTCTCAACTTTGTCGTGTATACTTTTCCTGTTGTTGCTCTGGTTATAATCGGACTGGTTTATTTGAATATCAAACACTCCAAGCCACAAACTTGCAGGAATTTTTCAACCTTTTCCAATACTCTTTCGAACCCACTTGTTGTGAACAGCTATGTGGGTATTTTATCTGGAATTGAGCTTCTGGGTGTTGCTTTGTTTCTCCTCTTCCTGGCTTGGACGTTCTATGCTCGAATATCCAAAGATTTCAGAAAGTTGATGCCCGAAGAATCACTCAACTTGAAGATATGGGAACTCAAGTATTTAAGAGTAGCCACCAGGTTTGGTTTGCTAGCAGAGGCCTGTTTGGGGCTGCTTCTTCTGCCTGTCTTGAGAGGGTTGGCTCCATTTCGGCTAATTGGCATTCAGTTTGAAGCTTCAGTGAAGTATCACGTCTGGCTTGGCACTGCAATGGTGTTGTTTGGCACCTTCCATGGCGCCAGCACCTTGTTCATCTGGGGGATCAGCAACCAGATTCAGGATCAGGTGTGGAAATGGCAGAACACCGGCCGGATTTACATCGCCGGGGAGATTACTTTGATTACAGGATTGGTGATTTGGATCACTTCCCTGCCTCAGATAAGGAGAATCAAATTTGAGATCTTCTACTACACACACCATTTATACATTGTCTTTTTTGTGTTCTTCTTGTTTCATGCTGGAGATAGACACTTTTACATGGTATTTCCTGGACTGTTTCTCTTCGCCATTGATAAGATCCTCCGAATTATTCAGTCTAGAACCGAAACGTGTGTCGTCTCGGCTCGAGTCCTCCCCTGCAAAGCTGTGGAACTAACTCTGCCAAAAGACCACAGGCTGAAGTATAAACCAACTAGCGTTGTGTATGTGAAGATACCAAGGATTTCCAGATTTGAGTGGCATGCTTTCAGCTTGATTTCCAGCTCGAGTGTTGATGATGAAACAATGTCGATCGTCGTTAAATGTAATAAGTCATGGACGAAGTCTTTGTATGAGATAATCAACACCGAACGAGAGGGAGAGTCGGATCAGTTGAAGTGCATTTCCGTTGCAGTCGAGGGCCCTTATGGACCTGCCTCCTTGGACTTCCTAAGATATGATCACTTGATTCTGATTGCTGGAGGAATTGGAGTAACCCCACTTTTGAGCATTTTACAGGAGATCACTTCTATGAAGAACAACACTAAATTCATCTGCCCTGCAAGAATCCAGCTTATACATGTCATGAAAAAGTCCCACGAGATTGCGCTACTCAGCTCGATCTTACCTTTACTACTGAAACGCTTGGATGGAAAAATGCATTTGCAGCTCAAAGTATTCGTGACACAAGAACTGCAATCCAGTTCAACTCTAACCGAACTGCTAAACAAGTTCTCTCAAATGCAGACGATACAATCGAGCGTGAACTGTTCAAGCTATGCAGCACATGGGCTTGAAAGCTTAGGCTGGATGGCTGTAATTACTGGACTGATATCAATCGTGTTCTTTGTCGCCCTTATCGTCTTCAACCATATCGTCGTTCCAACCAAGAAAGCCTCCAAAAAGACAAAAGACAGAACCCCATCTTGGATCTCGGATCTTCTTCTGATGTCTTCCTTCGCTTTAGCTATCTTATCCGGGGCGGTCGTCGGGATTGTTTTACGACGGAGAAGACTGAAGAAAGGAAATCTAGCACTCATCCAAAGCCAAAACCAAACCAAGAACACAACTCCAAGTTCAGTAGCAAGAGGAAGTAGACAAGAAGAACATGAAATATATTTTGGAGAAAGGCCTAACTTCATAGAGATATTCTCCAACATCAACAACCCGGCAGGCGAATCGGACATCGGCGTGATCAGCAGTGGACCAGAGGCAATGAACTTGTCAGTAGCCAAAGCTTGTAAGCAAATGTCTGGAGGTTCAAGGAAAGGCTCAAAGAAGAACAAACAGCAATTCAGTTTCCATTCCCTCAACTTCACTCTCTGA 2223 43.68 MYKFTTQTQTPNSQTENRGRIISNMNRNHKARAVLLTAIEVFMILLCAGWVSLWLLKPTDLWTRKWRVAENTARASVFGYYGLNFVVYTFPVVALVIIGLVYLNIKHSKPQTCRNFSTFSNTLSNPLVVNSYVGILSGIELLGVALFLLFLAWTFYARISKDFRKLMPEESLNLKIWELKYLRVATRFGLLAEACLGLLLLPVLRGLAPFRLIGIQFEASVKYHVWLGTAMVLFGTFHGASTLFIWGISNQIQDQVWKWQNTGRIYIAGEITLITGLVIWITSLPQIRRIKFEIFYYTHHLYIVFFVFFLFHAGDRHFYMVFPGLFLFAIDKILRIIQSRTETCVVSARVLPCKAVELTLPKDHRLKYKPTSVVYVKIPRISRFEWHAFSLISSSSVDDETMSIVVKCNKSWTKSLYEIINTEREGESDQLKCISVAVEGPYGPASLDFLRYDHLILIAGGIGVTPLLSILQEITSMKNNTKFICPARIQLIHVMKKSHEIALLSSILPLLLKRLDGKMHLQLKVFVTQELQSSSTLTELLNKFSQMQTIQSSVNCSSYAAHGLESLGWMAVITGLISIVFFVALIVFNHIVVPTKKASKKTKDRTPSWISDLLLMSSFALAILSGAVVGIVLRRRRLKKGNLALIQSQNQTKNTTPSSVARGSRQEEHEIYFGERPNFIEIFSNINNPAGESDIGVISSGPEAMNLSVAKACKQMSGGSRKGSKKNKQQFSFHSLNFTL 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 426124 431085 - CmoCh10G001000.1 Cmo10g00100 389446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00100 740 Pfam Ferric reductase NAD binding domain 452 713 IPR013121 GO:0016491
Cmo10g00100 740 MobiDBLite consensus disorder prediction 1 20 - -
Cmo10g00100 740 PANTHER NADPH OXIDASE 32 739 - -
Cmo10g00100 740 SFLD Ferric reductase subgroup (FRE) 18 740 - -
Cmo10g00100 740 CDD NOX_Duox_like_FAD_NADP 345 501 - -
Cmo10g00100 740 SFLD Ferric Reductase Domain 60 740 - -
Cmo10g00100 740 Pfam FAD-binding domain 346 446 IPR013112 GO:0016491
Cmo10g00100 740 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 436 510 IPR039261 -
Cmo10g00100 740 PRINTS Cytochrome B-245 heavy chain signature 292 312 IPR000778 GO:0016020|GO:0016491
Cmo10g00100 740 PRINTS Cytochrome B-245 heavy chain signature 267 290 IPR000778 GO:0016020|GO:0016491
Cmo10g00100 740 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 338 448 IPR017927 GO:0016491
Cmo10g00100 740 Gene3D - 436 566 IPR039261 -
Cmo10g00100 740 Gene3D - 597 738 IPR039261 -
Cmo10g00100 740 PANTHER FERRIC REDUCTION OXIDASE 8, MITOCHONDRIAL 32 739 - -
Cmo10g00100 740 Pfam Ferric reductase like transmembrane component 189 309 IPR013130 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00100 K00521 E1.16.1.7; ferric-chelate reductase [EC:1.16.1.7] - csv:101203723 1153.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00100 Cmo-Chr10:426124 Cmo16g00120 Cmo-Chr16:537336 3.01E-106 dispersed
Cmo10g00100 Cmo-Chr10:426124 Cmo16g00114 Cmo-Chr16:517584 1.90E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g813 . . . . . . . . . . Cma10g00097 . Car10g00085 . . . . . . . . . . . . . . . . . . Cone2ag0929 Cone16ag0077 . . . . . . . . . . . . . . . Cmo10g00100 . . . . . . Cpe18g00866 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011006 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00100 Cmo_Chr10 FPKM 35.907619 38.909344 6.939395 5.66799 5.545624 5.426808 5.238934 6.70344 6.638211 6.501497