Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00101 ATGGAAGAGGAGTTTCAAGGAAGGCCAGCAGAGTTGCAACTGCAATGCTGCAGTGCAAGGATCATGTCACCGGAGATCGTCGAGATTGGAGACGAAAGTAAGACTATTATCAGTAGCAGTGACCGTGGTGCAACCGATGTCTATGTCGCCGTTGGTAAAGATGATATAGATGTGCTTAAATGGGCCCTTGATCATGCTGTCTCACCTGGTTGTTGTGTCTTTCTTATCCATGTTTTTCCTCCTCTCACCTACATCCCTACTCCAGTTGGAAGATTAGCAAGGAGTCAACTGAGCCAAGAACAACTGAGAGTGTACATCAATGAGGAAAACAATAGAAGGAGAAATCTCTTGCAAAAGTACATCCGGTTATGCACTGACGCCAAGGTGACAGTGGACACATTGCTTCTGGAGAGCAACACGACAGCCAAAGCAATCCTTCAACTAATTCCAGTGCTCAACATCACCAATTTAGTCATAGGAACCAAAAATCCACTTTCCACAAGGCTATTGGGGAAAAGAATGGCGAAAGGAGAGTTTGTGAAAAAGAATGCACCAGAATGTTGCGAGGTTACCATTGTTTATGAAGGCAAAAAGGTCGATGAGCGTCACCAGGAAATGGGGTTGCTTCCTTCTTCTCAAAACTCCGGTTGCCGTCGCCGGCGCTCCGGCAAGAACTTGTTCGAGTGTGTGTGCTTGTTCAGCAGCCCGTGTATCAGAGTCATGAATCCTTACGACCATAGATACGCCGATCCCAATTCCTACCGCGAGCGCCGAAGTGACCTAGTGGGTCCACAGCCTGCTGCGCCGCCGCCGATAGCAGGGCGTGAATCTATGTACAAAGGCTTTCATCCTCCTCCAGTACCATATTATGGCCGTGAAAGAGGTGGGGGAGGTGCTTTACCTAATGCTGGAGGTTTTAATGGCTTCCCGCGGTTTCAGCCTCCCGCAGGACCGTTCAATATCGGTCGCAGTGGCAATGATTTCGGTAGCGGCGGAAGGAGAATGTTTGATTCTGGGAGGGGCGGGAATATGGGTTTTGGAGGTAGACGTGGTGGAGGAACGGGATTTGAGGGGCGTGTTGGCGGAAGTGGGGCTGGACGTGGTGGTTCATCAAGAGGGGACTTAGATAACATAGTTCTTCCGAGTCAGAATTTTGGGGATTTGGTCCCTTTTGAAAAGAACTTCTACACTGAGTGTCCTTCTGTGCGAGCAATGACGGAGTCCGAAGTCAAGATGTACAGAGAGAGGCGTGATATTAGAGTGGAAGGATACGATGTCCCAAAACCGATTCGGAGTTTTCAGGAGGCAAATTTTCCTGCTTACTGCCTTGATGTGATTGCGAAATTGGGATTTGTTGAACCAACACCAATTCAGGCTCAAGGATGGCCCATGGCCATGAAAGGAAGAGATTTGATTGGCATTGCTGAAACTGGCTCTGGGAAGACTCTGGCTTATCTACTGCCAGCTTTAATACACATTAGTGCCCAGCCTCGTTTGGTGCATGGTCAAGGTCCCATTGTATTGGTGTTAGCGCCCACCAGAGAATTAGCTGTTCAGATTCAACAAGAGGTCACTAAATTTGGGTTGCGCGCTAATATTAGAAGTACTTGCATTTATGGTGGGGCTCCTAAGGGCCCTCAAATTCGTGATCTCAAAAATGGTGTTGAGATTGTTATTGCTACACCTGGTCGGCTCATAGATATGCTGGAAGCTGGCCACACAAACCTGCAGCGAGTTACTTATCTTGTTTTGGATGAAGCTGATAGAATGCTGGACATGGGATTTGAGCCTCAAATAAGGACAATCGTGAGCCAAATCCGACCTGATAGGCAGACATTATATTGGAGTGCCACATGGCCAAGGGAGGTCGAAAAATTGGCTAGGCAATTTTTACATAATGCATATAAGGTGATTATCGGTTCATCAGATCTTAAAGCTAACCAGTCAATAAACCAAGTCGTCGAAGTTTTACCAGAGGCTGAGAAATATAGAAGGTTAATAAAATTGCTTGTAGAAGTGATGGATGGTAGCCGTATTCTGATTTTTGTGGAGACAAAAAAGGGATGTGATAAAGTAACAAGGCAATTGAGAATGGATGGATGGCCAGCTCTATCCATTCATGGGGATAAAAAGCAGGCTGAAAGGGACTTGGTTTTGTCCGAGTTTAAGAGTGGAAGAAACCCAATAATGACAGCCACTGATGTGGCTGCAAGAGGGCTTGGTAGGGTTACTACATGTCAGGTGTTTTAG 2250 46.76 MEEEFQGRPAELQLQCCSARIMSPEIVEIGDESKTIISSSDRGATDVYVAVGKDDIDVLKWALDHAVSPGCCVFLIHVFPPLTYIPTPVGRLARSQLSQEQLRVYINEENNRRRNLLQKYIRLCTDAKVTVDTLLLESNTTAKAILQLIPVLNITNLVIGTKNPLSTRLLGKRMAKGEFVKKNAPECCEVTIVYEGKKVDERHQEMGLLPSSQNSGCRRRRSGKNLFECVCLFSSPCIRVMNPYDHRYADPNSYRERRSDLVGPQPAAPPPIAGRESMYKGFHPPPVPYYGRERGGGGALPNAGGFNGFPRFQPPAGPFNIGRSGNDFGSGGRRMFDSGRGGNMGFGGRRGGGTGFEGRVGGSGAGRGGSSRGDLDNIVLPSQNFGDLVPFEKNFYTECPSVRAMTESEVKMYRERRDIRVEGYDVPKPIRSFQEANFPAYCLDVIAKLGFVEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALIHISAQPRLVHGQGPIVLVLAPTRELAVQIQQEVTKFGLRANIRSTCIYGGAPKGPQIRDLKNGVEIVIATPGRLIDMLEAGHTNLQRVTYLVLDEADRMLDMGFEPQIRTIVSQIRPDRQTLYWSATWPREVEKLARQFLHNAYKVIIGSSDLKANQSINQVVEVLPEAEKYRRLIKLLVEVMDGSRILIFVETKKGCDKVTRQLRMDGWPALSIHGDKKQAERDLVLSEFKSGRNPIMTATDVAARGLGRVTTCQVF 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 433222 437579 + CmoCh10G001010.1 Cmo10g00101 389447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00101 749 Pfam Helicase conserved C-terminal domain 661 740 IPR001650 -
Cmo10g00101 749 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 462 637 IPR014001 -
Cmo10g00101 749 PANTHER LD32873P 377 740 - -
Cmo10g00101 749 Gene3D - 642 741 IPR027417 -
Cmo10g00101 749 SMART ultradead3 450 653 IPR014001 -
Cmo10g00101 749 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 665 749 IPR001650 -
Cmo10g00101 749 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 431 459 IPR014014 GO:0003724
Cmo10g00101 749 Gene3D - 395 641 IPR027417 -
Cmo10g00101 749 Pfam DEAD/DEAH box helicase 455 626 IPR011545 GO:0003676|GO:0005524
Cmo10g00101 749 CDD SF2_C_DEAD 650 740 - -
Cmo10g00101 749 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 583 591 IPR000629 -
Cmo10g00101 749 Gene3D HUPs 47 176 IPR014729 -
Cmo10g00101 749 CDD STK_N 47 196 - -
Cmo10g00101 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 648 740 IPR027417 -
Cmo10g00101 749 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 377 740 - -
Cmo10g00101 749 MobiDBLite consensus disorder prediction 255 280 - -
Cmo10g00101 749 CDD DEADc_DDX5_DDX17 443 637 - -
Cmo10g00101 749 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 55 170 - -
Cmo10g00101 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 639 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00101 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - csv:101203955 853.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00069 Cmo-Chr1:283544 Cmo10g00101 Cmo-Chr10:433222 0 dispersed
Cmo07g00356 Cmo-Chr7:1640888 Cmo10g00101 Cmo-Chr10:433222 9.27E-35 dispersed
Cmo10g00101 Cmo-Chr10:433222 Cmo14g01604 Cmo-Chr14:12689868 3.30E-110 dispersed
Cmo13g00336 Cmo-Chr13:4328578 Cmo10g00101 Cmo-Chr10:433222 6.78E-30 dispersed
Cmo10g00101 Cmo-Chr10:433222 Cmo14g01301 Cmo-Chr14:10876386 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g811 . . . . . . . . . . Cma10g00099 . Car10g00086 . . . . Bhi02g00510 . . . . . . Cla06g01693 Cam06g1881 Cec06g1928 Cco06g1933 Clacu06g1837 Cmu06g1779 Cre06g2594 Cone2ag0927 . . . . . . . . . . . Bpe07g00856 . . . . Cmo10g00101 . . . . . . Cpe18g00865 . . . . . . . . . . . . . . Lsi06g01588 . Chy02g02611 Cme02g02008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011968 0 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00101 Cmo_Chr10 FPKM 1.543318 1.337183 1.405415 2.255708 2.139267 1.444409 1.833004 0.0 0.406424 0.47102