Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00105 ATGGCCGATGATATTTACGGCAGCGCTTCACTTCCGTCAGGTCCCGATGGCTGGAAACGCCGTGTGACCTACTTCTACGAGCCCACAATCGGCGATTATTACTACGGCCAAGGCCATCCGATGAAACCTCACCGTATCCGCATGGCTCATAACCTCATTGTTCACTATGGCCTTCACCGTCGGATGGAGATCAACCGGCCCTACCCTGCTGGTTCCGAGGATATCCGGAGGTTTCACTCCGATGACTATGTCGATTTTCTCGCCTCCGTCAGCCCCGAAACGCTGTCGGATCATGCCTTCTCTCGCCATCTCAAGCGCTTTAATGTTGGCGAGGACTGCCCTGTTTTTGATGGCTTATTCGGCTTCTGCCAGGCCTCTGCTGGCGGCTCCATTGGTGCGGCCGTCAAGCTCAATCGCGGCGATGCTGATATTGCTATCAATTGGGCCGGTGGGCTTCATCATGCTAAGAAGTCTGAGGCCTCCGGTTTTTGTTACGTCAATGATATTGTGTTGGGCATTCTTGAGCTGCTGAAGTACCACAGGCGGGTATTATATATTGACATTGATGTCCATCATGGTGATGGTGTGGAGGAGGCATTTTACACTACCGACAGGGTAATGTCGGTCTCCTTCCATAAATTTGGGGATTTCTTTCCAGGGACTGGACACATTAAGGATGTTGGGGCAGGGTCTGGTAAAAACTATGCTCTTAATGTCCCTTTAAATGATGGAATGGATGATGACAGTTTTCGTGGTCTGTTTAGGCCACTCATTCAAAAAGTCATGGAGGTGTATCAGCCAGAGGCAGTAGTACTCCAATGTGGTGCTGATTCATTAGCTGGTGATAGGTTGGGGTGCTTCAACTTATCTGTGAAAGGCCATGCAGATTGTCTTCATTTCTTGAGATCATTTAACGTTCCTTTAATGGTATTAGGTGGTGGAGGATATACAATCCGCAATGTTGCTCGCTGCTGGTGTTACGAGGTCTCTTTCTCTTCGTTCTTGTCCGTATATTTAATTCTACCTCGAACCATCCTTACAAGTTTCGTTTGTGGAGATTTCTCTCAACAGACAGCGGTTGCTGTTGGAGTTGAACCAGACAACAAATTGCCTTACAACGAGTATTTCGAGTATTTTGGACCTGATTACACGCTTCACATCGAACCATCCAACATGGAGAATCTAAATTCACCTAAAGATATGGAAAAAATAAGGAACACCCTGCTGGAGCAACTCTCTAGACTCCCACATGCACCCAGTGTACCTTTCCAGATGACTCCCTCCTCCGAAGTCCCCGAAGAGCGTTTTCTTCTCTTGAGATCATGTTGGTTCTTTGGTGGTAAGGTGGAAGAGAACATCGACCGGAGACCGAAACGCCGCATTTGGAACGGTGAGGATTATGATTCTGCACCTGAAGAAAACAGAAAGCGACCAAACATCAGTGAAGGGCATGGTGTAAATAATCTGACCAGGGACGATGTCGATGGTATGGAGGAAGATAAAAACATGGACCATCGAACTTGCTGA 1527 47.74 MADDIYGSASLPSGPDGWKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEINRPYPAGSEDIRRFHSDDYVDFLASVSPETLSDHAFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKYHRRVLYIDIDVHHGDGVEEAFYTTDRVMSVSFHKFGDFFPGTGHIKDVGAGSGKNYALNVPLNDGMDDDSFRGLFRPLIQKVMEVYQPEAVVLQCGADSLAGDRLGCFNLSVKGHADCLHFLRSFNVPLMVLGGGGYTIRNVARCWCYEVSFSSFLSVYLILPRTILTSFVCGDFSQQTAVAVGVEPDNKLPYNEYFEYFGPDYTLHIEPSNMENLNSPKDMEKIRNTLLEQLSRLPHAPSVPFQMTPSSEVPEERFLLLRSCWFFGGKVEENIDRRPKRRIWNGEDYDSAPEENRKRPNISEGHGVNNLTRDDVDGMEEDKNMDHRTC 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 456335 459161 + CmoCh10G001050.1 Cmo10g00105 389451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00105 508 Pfam Histone deacetylase domain 39 329 IPR023801 -
Cmo10g00105 508 CDD HDAC_classI 25 330 - -
Cmo10g00105 508 SUPERFAMILY Arginase/deacetylase 20 414 IPR023696 -
Cmo10g00105 508 MobiDBLite consensus disorder prediction 488 508 - -
Cmo10g00105 508 MobiDBLite consensus disorder prediction 463 480 - -
Cmo10g00105 508 Gene3D Histone deacetylase domain 13 427 IPR037138 -
Cmo10g00105 508 PRINTS Histone deacetylase superfamily signature 182 197 IPR000286 -
Cmo10g00105 508 PRINTS Histone deacetylase superfamily signature 150 173 IPR000286 -
Cmo10g00105 508 PRINTS Histone deacetylase superfamily signature 267 277 IPR000286 -
Cmo10g00105 508 PANTHER HISTONE DEACETYLASE 6 7 477 - -
Cmo10g00105 508 MobiDBLite consensus disorder prediction 463 508 - -
Cmo10g00105 508 PRINTS Histone deacetylase signature 128 148 IPR003084 GO:0004407|GO:0016575
Cmo10g00105 508 PRINTS Histone deacetylase signature 41 58 IPR003084 GO:0004407|GO:0016575
Cmo10g00105 508 PRINTS Histone deacetylase signature 74 92 IPR003084 GO:0004407|GO:0016575
Cmo10g00105 508 PRINTS Histone deacetylase signature 228 241 IPR003084 GO:0004407|GO:0016575
Cmo10g00105 508 PRINTS Histone deacetylase signature 107 124 IPR003084 GO:0004407|GO:0016575
Cmo10g00105 508 PRINTS Histone deacetylase signature 169 185 IPR003084 GO:0004407|GO:0016575
Cmo10g00105 508 PRINTS Histone deacetylase signature 245 263 IPR003084 GO:0004407|GO:0016575
Cmo10g00105 508 PIRSF HDAC_I_euk 347 506 IPR003084 GO:0004407|GO:0016575
Cmo10g00105 508 PIRSF HDAC_I_euk 7 342 IPR003084 GO:0004407|GO:0016575
Cmo10g00105 508 PANTHER HISTONE DEACETYLASE 7 477 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00105 K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] - csv:101204443 904.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00105 Cmo11g00076 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00105 Cmo-Chr10:456335 Cmo20g00687 Cmo-Chr20:3387479 0 dispersed
Cmo10g00105 Cmo-Chr10:456335 Cmo11g00076 Cmo-Chr11:355753 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g806 . . . Bda15g00544 Bpe12g00667 . . . . . . Cma11g00075 Car10g00090 Car11g00067 . . Cpe04g01577 Bhi02g00504 Tan09g2293 . . Hepe09g0228 . . Cla06g01690 . . . . . . Cone2ag0926 Cone16ag0079 . . . . . . Blo13g00141 . . . . . . Bma08g00086 . Cmo10g00105 Cmo11g00076 . . . . . Cpe18g00862 . . . . . . . . . . . . . . Lsi06g01584 Csa01g00119 Chy02g02608 Cme02g02005
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000680 1 7 2 3 3 3 4 3 3 2 2 3 4 3 3 4 3 5 4 2 3 3 3 3 3 2 3 5 7 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00105 Cmo_Chr10 FPKM 0.771739 1.07483 0.998259 1.106308 0.164383 0.20494 0.32718 0.0 0.0 0.0