Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00106 ATGTCCTTTTATCTCCATATCCTTACGTCGGAGCTTTCCAAGACTTATCTAACTCTTTTACGAACAAAGGAACTGCATGCTTTTATCACCAAAACCCATCTTGCTTGCGACCCATTTTACGCAACTAGAATCGTCAGGCTTTACTCTATCAATGGCCGACTCAACTATGCCCGCCATGTGTTCGACAAAACTCCCAACCGAACTGTCTACCTCTGGAACTCAATCATTCGAGCTTATGCGAAAGCCCATAAATTCGGTAATGCATTATCTCTCTTCTTTACAATGTTTGGAACTGAGACTCTGCCCGATAACTTCACTTATTCATGCATCATAAGGGCATGCGCTGAAAATCTCCATAGAGAACGGCTGAAACTTGTTCATGGACGTGTTTTAGCATCTGGGTTTGGATTAGATCCTATCTGTTGCAGCGCGCTAGTCACTGCATACTCAAATCTAGACCTTATTGAAGATGCAAGCAAGGTGTTTGATGTAATGCCTCATCCAGACTTGGTTATGTGGAATTCGATCATTTCTGGTTTTGGGTATCGCGGGTTTTGGAATCAGGGGCTCTTGCTATTCTCTAGCATGAGGAATTTGGGAGAACATCCGGATGGATACACGGTAGTTGGTGTAGCATCAGGTATAGCAGAACCAAGCTTACTGAGTACTGGCAAAGGTATTCATGGATTTTGCCTCAAGTGTAGTCTTGACTCCAATGAGCACGTAGCTAGTGCACTTGTGAGCATGTATTCGAGGTGTAATTGCATGGATTCAGCATATTTAGTTTTTATTAGTTTGATACAGCCTGATTTAGTTACATGGTCTGCTTTGATAACTGGGTATTCTCAATCTGGTGATTTCTGGAAGGCACTGTTTTTCTTTCAGAAACTGAATATGCAGGGCAAGAAACCGGATGCCATTTTGATTGCCAGCATTTTGGCTGCTGCTGCTCAATCAGCCAACATAAGGCCTGGCATTGAGATACATGGCTATGCTCTTCGACAAGGGATAGATTCAGACGAAATGGTATCCTCTTCTCTCATAGACATGTACTCCAAGTGTGGCTATTTGAGTTTGGGAATTCGTGTTTTTTATATTATGCAACGAAAAGGTATTGTGGCATACAATTCTATAATATGGGGAATGGGTCTACATGGGCTTGCATCAAAGGCATTGGAAACGTTCGAGGAGATGTTGGGTATTGGTCTAATGCCTAATGAGTCTACTTTCTCTGCTCTCCTCTGTGCTTGCTGTCATGCTGGGCTTAACTCTGTTGGTAAGGCGATTTTCAAAAGGATGACAAATGAGTTTGGCATCAAATACAGAACAGAACATTATGTTTACATAGTAAAGCTTCTTGGAATGAGTGGGGAGTCAGAAGAGGCTTACGATCTTGTCCTGTCCTTGCCAGAACCTGTAGACTCTGGTGTTTGGGGGGCTCTGCTGTCCTGCTGTGATGCTTGTGGGAACCTTGAACTGGCTGAAATTGTTGCACAGAAGCTCTTAGAAAATAATCCCGACAAAATGGCTTATAGAGTAATGCTCTCTAATATCTATGCTGGAGAAGGGAGATGGGATGATGTCAACGTAGCTTTGCCACTTCTAGCATTCACTGGCATCGGCATTGCCTCAAGACCCATCAACTTAGCTACCACTCCTGGTTTGCGCCACAGGACATTCTCTCCAGCTATCGTTGATGGCAACCGTAAGGCTGTCTCCAATGTCAAATTGAACTCATTTTCATGA 1746 43.36 MSFYLHILTSELSKTYLTLLRTKELHAFITKTHLACDPFYATRIVRLYSINGRLNYARHVFDKTPNRTVYLWNSIIRAYAKAHKFGNALSLFFTMFGTETLPDNFTYSCIIRACAENLHRERLKLVHGRVLASGFGLDPICCSALVTAYSNLDLIEDASKVFDVMPHPDLVMWNSIISGFGYRGFWNQGLLLFSSMRNLGEHPDGYTVVGVASGIAEPSLLSTGKGIHGFCLKCSLDSNEHVASALVSMYSRCNCMDSAYLVFISLIQPDLVTWSALITGYSQSGDFWKALFFFQKLNMQGKKPDAILIASILAAAAQSANIRPGIEIHGYALRQGIDSDEMVSSSLIDMYSKCGYLSLGIRVFYIMQRKGIVAYNSIIWGMGLHGLASKALETFEEMLGIGLMPNESTFSALLCACCHAGLNSVGKAIFKRMTNEFGIKYRTEHYVYIVKLLGMSGESEEAYDLVLSLPEPVDSGVWGALLSCCDACGNLELAEIVAQKLLENNPDKMAYRVMLSNIYAGEGRWDDVNVALPLLAFTGIGIASRPINLATTPGLRHRTFSPAIVDGNRKAVSNVKLNSFS 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 459500 462183 + CmoCh10G001060.1 Cmo10g00106 389452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00106 581 Pfam PPR repeat 272 297 IPR002885 -
Cmo10g00106 581 Pfam PPR repeat 171 200 IPR002885 -
Cmo10g00106 581 Pfam PPR repeat 141 165 IPR002885 -
Cmo10g00106 581 Gene3D Tetratricopeptide repeat domain 4 122 IPR011990 GO:0005515
Cmo10g00106 581 Gene3D Tetratricopeptide repeat domain 340 532 IPR011990 GO:0005515
Cmo10g00106 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Cmo10g00106 581 SUPERFAMILY TPR-like 77 527 IPR011990 GO:0005515
Cmo10g00106 581 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 529 - -
Cmo10g00106 581 PANTHER OS01G0545900 PROTEIN 6 529 - -
Cmo10g00106 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Cmo10g00106 581 Gene3D Tetratricopeptide repeat domain 232 327 IPR011990 GO:0005515
Cmo10g00106 581 Gene3D Tetratricopeptide repeat domain 123 222 IPR011990 GO:0005515
Cmo10g00106 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Cmo10g00106 581 TIGRFAM PPR: pentatricopeptide repeat domain 171 204 IPR002885 -
Cmo10g00106 581 Pfam PPR repeat family 371 419 IPR002885 -
Cmo10g00106 581 Pfam PPR repeat family 68 115 IPR002885 -
Cmo10g00106 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Cmo10g00106 581 Pfam E motif 490 529 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00106 - - - cpep:111779824 1035.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00106 Cmo-Chr10:459500 Cmo07g01375 Cmo-Chr7:7823636 6.34E-35 dispersed
Cmo10g00106 Cmo-Chr10:459500 Cmo18g00839 Cmo-Chr18:9765823 3.90E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g803 . . . . . . . . . . Cma10g00102 . Car10g00091 . . . . Bhi02g00502 . . . Hepe09g0226 . . . . . . . . . . . Cone13ag0161 . . . . . Blo13g00138 . . . . . . . . Cmo10g00106 . . . . . . . . . . . . . . . . . . . . . . Csa01g00120 Chy02g02607 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014459 0 1 1 0 0 1 1 0 0 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00106 Cmo_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0