Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00109 ATGGCATCATCAAGTTCTTACAACTCTCCCTGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGTCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAGATCTTTGGGGCCAGCAACGTGACAAAGCTGCTGAATGAACTTCTGCCTCACCAAAGAGAGGATGCAGTGAACTCTCTTGCGTATGAGGCCGAAGCCCGAGTCCGGGACCCGGTCTATGGCTGCGTCGGAGCCATCTCCTTCCTCCAAAGGCAAGTCCAGAGGCTCCAGAAGGAACTCGACGCTGCGAATGCCGACCTAATTCGGTACGCATGCAACGAGATACCTAATGCAGGAGTAAGTCATGTGGTTCAACCAAGCCCTGGTGCTCGCCCAAGAGCTTTGGATCAGTTTCATACAAGTTCATCAACTGGGTATTACAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCACTGCCTTGGAATGAAAACTCTCCTGGAAATGACATCAATGAAGGAGGAGGGGATGGCAATATTTGA 552 48.91 MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPNAGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGDGNI 183
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 468151 468702 + CmoCh10G001090.1 Cmo10g00109 389455
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00109 183 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 182 - -
Cmo10g00109 183 PANTHER ELONGATED PETIOLULE 1 1 182 - -
Cmo10g00109 183 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Cmo10g00109 183 Coils Coil 89 116 - -
Cmo10g00109 183 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00614 Cmo-Chr2:3809187 Cmo10g00109 Cmo-Chr10:468151 7.86E-53 dispersed
Cmo10g00109 Cmo-Chr10:468151 Cmo20g01156 Cmo-Chr20:11332397 4.84E-51 dispersed
Cmo10g00109 Cmo-Chr10:468151 Cmo11g00077 Cmo-Chr11:363795 5.34E-118 wgd
Cmo10g00109 Cmo-Chr10:468151 Cmo11g01668 Cmo-Chr11:11836728 2.10E-68 wgd
Cmo10g00109 Cmo-Chr10:468151 Cmo13g00898 Cmo-Chr13:8029265 2.96E-66 wgd
Cmo10g00109 Cmo-Chr10:468151 Cmo14g00684 Cmo-Chr14:3497304 9.16E-71 wgd
Cmo10g00109 Cmo-Chr10:468151 Cmo18g00146 Cmo-Chr18:1025085 8.39E-63 wgd
Cmo10g00109 Cmo-Chr10:468151 Cmo04g02817 Cmo-Chr4:20199087 2.38E-64 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10416 PF03195 LOB 5.00E-42 No_clan Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00109 - - cmos:111430134 355.525