Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo10g00109 | ATGGCATCATCAAGTTCTTACAACTCTCCCTGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGTCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAGATCTTTGGGGCCAGCAACGTGACAAAGCTGCTGAATGAACTTCTGCCTCACCAAAGAGAGGATGCAGTGAACTCTCTTGCGTATGAGGCCGAAGCCCGAGTCCGGGACCCGGTCTATGGCTGCGTCGGAGCCATCTCCTTCCTCCAAAGGCAAGTCCAGAGGCTCCAGAAGGAACTCGACGCTGCGAATGCCGACCTAATTCGGTACGCATGCAACGAGATACCTAATGCAGGAGTAAGTCATGTGGTTCAACCAAGCCCTGGTGCTCGCCCAAGAGCTTTGGATCAGTTTCATACAAGTTCATCAACTGGGTATTACAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCACTGCCTTGGAATGAAAACTCTCCTGGAAATGACATCAATGAAGGAGGAGGGGATGGCAATATTTGA | 552 | 48.91 | MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPNAGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGDGNI | 183 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 468151 | 468702 | + | CmoCh10G001090.1 | Cmo10g00109 | 389455 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo10g00109 | 183 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 182 | - | - | |
| Cmo10g00109 | 183 | PANTHER | ELONGATED PETIOLULE 1 | 1 | 182 | - | - | |
| Cmo10g00109 | 183 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 107 | IPR004883 | - | |
| Cmo10g00109 | 183 | Coils | Coil | 89 | 116 | - | - | |
| Cmo10g00109 | 183 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo10g00109 | Cmo13g00898 | CCT | |
| Cmo10g00109 | Cmo18g00146 | CCT | |
| Cmo10g00109 | Cmo13g00898 | ECH | |
| Cmo10g00109 | Cmo18g00146 | ECH | |
| Cmo10g00109 | Cmo11g00077 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo02g00614 | Cmo-Chr2:3809187 | Cmo10g00109 | Cmo-Chr10:468151 | 7.86E-53 | dispersed | |
| Cmo10g00109 | Cmo-Chr10:468151 | Cmo20g01156 | Cmo-Chr20:11332397 | 4.84E-51 | dispersed | |
| Cmo10g00109 | Cmo-Chr10:468151 | Cmo11g00077 | Cmo-Chr11:363795 | 5.34E-118 | wgd | |
| Cmo10g00109 | Cmo-Chr10:468151 | Cmo11g01668 | Cmo-Chr11:11836728 | 2.10E-68 | wgd | |
| Cmo10g00109 | Cmo-Chr10:468151 | Cmo13g00898 | Cmo-Chr13:8029265 | 2.96E-66 | wgd | |
| Cmo10g00109 | Cmo-Chr10:468151 | Cmo14g00684 | Cmo-Chr14:3497304 | 9.16E-71 | wgd | |
| Cmo10g00109 | Cmo-Chr10:468151 | Cmo18g00146 | Cmo-Chr18:1025085 | 8.39E-63 | wgd | |
| Cmo10g00109 | Cmo-Chr10:468151 | Cmo04g02817 | Cmo-Chr4:20199087 | 2.38E-64 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10416 | PF03195 | LOB | 5.00E-42 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo10g00109 | - | - | cmos:111430134 | 355.525 |