Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00117 ATGCCTGTAAATTCATGGACCCTCCCCTCCTCATCTATCCTAATCCTAATCCTCTGTTTTTCAGTCTTCTACCTCTTCCCTCTCCCAACTTCCGCCATTAACGAACAGGGTCAAGCTCTACTCACTTGGAAGCTCAGTTTCAATGGATCAAACCAGGCTCTACGTAATTGGGACCCTAACAACCAAACTCCATGTGGGTGGTTTGGAATCACTTGCAACACAAACAGAGAAGTAGTGGAAGTAGTACTGAGGGACGTGGAATTACCTGGTGAACTTCCTTCGAATTTCTCTTCACTCTCGTCGTTGAACAGGCTCGTGTTGTCTGGTGTGAACCTCACCGGTTCCATTCCTAAAGAGATCGGTGTTCTTAGCCAGCTCCGGACCTTGGAACTTAGTGACAATGGCTTAACTGGAGAAATCCCAAGTGAAATATGTGCCTTGCTAGATCTCGAACAGCTTGACCTCAATTCGAATCATCTCGAAGGATCAATACCTGCAGGGATCGGGAATCTCACGAACTTGAAGGAGCTGATTCTGTATGACAATCAGTTAAGTGGTGAAATTCCCATTAGTATAGGAAATTTGAAGCAGCTTGAAGTGATTAGAGCTGGAGGGAACAAGAACTTACTTGGTTCTGTGCCGGAAGAAATTGGTAACTGCAGCAGTTTGGAGATTCTTGGTCTAGCTGAAACAAGCATCTCGGGGTTCCTTCCATCTAGTCTTGGCCGCCTCAAGAAGCTTCAAACATTGGCAATCTATACTACGCTACTCTCCGGCCAGATTCCTCATGAACTTGGCGACTGCACTGAGCTCCAAAACGTTTATCTCTATGAGAACTCGCTCTCCGGCTCGATCCCAAGCACGTTAGGAAGGTTACAAAATCTCCAGAGTTTGCTAGTATGGCAGAACAATTTGGTCGGCGTTATACCGATGGAGCTAAGTCAGTGTAACCAATTATTGGTTATCGACATTTCAATTAATTCCTTGACAGGAAGCATTCCTTCAACGTTTGGGAACTTGACATTGCTCCAAGAATTGCAACTGAGTTCAAATCAATTATCCGGTGAGATTCCGAAGGAGATCGGAAGCTGTTCGAGAATCACTCATATCGAGCTTGATAATAACCAGCTCACTGGTACGATCCCTTCTGAATTGGGAAATCTCACCAATCTGACATTGCTGTTCTTGTGGCAAAACAAGCTCGAGGGGAGTATTCCACCCACCATTTCCAATTGTGGCAACCTCGAGGCTTTGGATTTATCATTGAACGCCTTGACAGGTTCGATTCCGACTGGAATTTTCGAGTTGAAAAAGCTTTCCAAGCTTCTGCTCCTCTCCAACAACCTGTCTGGTGTGATACCGCCGGCGATTGGTAACTGTTCGTCTCTGTTTCGGTTACGAGCGAATGACAACAAGCTCACAGGAGAAATTCCGCCGGAGATTGGGAATTTGAAGAACTTGATTTTCCTAGACCTTGGAAACAATCGCCTCACTGGAGCGTTGCCTCCGGAGATCTCCGGCTGTAGAAATTTGACATTCCTCGATTTGCATTCCAACTCTCTAACAAAATCTCTTCCAGAAGAATTCAATCAGCTTTCTTCTCTTCAGTATGTTGATCTCTCAAATAATCAAATCGAAGGGACGCCGAATCCGAGTTTTGGAGCTTTCAACTCGCTCACGAAACTAATTCTCTCAAACAACCACTTCTCGGGGCCTGTACCGACTGAAATCGGTTCCTGCTTGAAACTTCAGTTACTGGATTTAAGTTGCAATCAGCTCTCTGGAAATGTTCCTCCGAGCTTAGGGAAGATTCCTTCACTAGAAATTGGTCTCAATCTGAGCTTAAACCATCTAACCGGCGAGATTCCCCCGGAGTTTGCAAATTTAGACAAGCTAGGGTCATTGGACCTCTCTTACAACCAACTCTCAGGCGACCTCCACATTCTCGCAGACCTGAAAAATCTCGTAGTCCTCAATGTATCACACAACAATTTCTCAGGGCGTGTGCCGGAGACGTCATTCTTCACGCAGCTCCCTCTAAGCGTCCTCTCGGGGAATCCGGACTTGTGCTTCGCCGGCGAAAAATGTTACGCCGATAACCACACCGGCGGCGGTCACCACACGCTAGCGGCTCGAGTGGCCATGGTGGTGTTACTGTGCACGGCGTGCGCACTGCTACTAGCGGCAGTATATATCATTCTCAAAGATAGACATTCGTGTCGAGGATGCTTCAATGGGTCCCGCGGTGAAGATTCAGACGCCGCCTTTGACAGCGACCTGGAGCTTGGCTCAGGCTGGGAAGTGACATTATACCAGAAGCTTGATCTTTCAATCTCCGACGTAATCAACTGCTTAACGCCAGCCAACGTCATCGGCCGCGGCAAGACCGGTGTGGTGTATAGAGTCTGCATCTCATCAGGTCTAATAATCGCCGTGAAGCGATTCCGATCATCAGATAAGTTCTCGGCGGCAGCGTTTTCATCCGAAGTCGCAACACTGGCGAGAATCCGTCATCGGAACATCGTCCGATTGCTAGGGTGGGGGGCGAATCGGAGGACGAAGTTGCTGTTCTACGACTACTTGCCGAACGGGAATTTGGGCGAGTTGCTACACGAGGGAAATGGGCGCGTGGGGTTGGACTGGGAGAGTAGATTCAAGATAGCATTGGGAGTGGCGGAGGGTTTGGCTTATTTGCACCACGACTGCGTGCCGGCAATACTGCACCGGGACGTGAAGGCTCACAACATTCTGTTGGGGGATCGCTACGAGGCGTGTTTGGCGGACTTTGGGCTCGCCCGCTTGGTTGAAGATGGTCCAAGCGGTTCGTCTTCCGCGAACCCCCAGTTCGCTGGTTCTTACGGCTACTTTGCACCCGAGTATGGCTGCATGTTAAGGATCACCGAAAAGAGCGATGTGTATAGCTACGGCGTCGTTTTGCTGGAGTTAATTACCGGTAAAAAACCTGCAGACTCATCATTTCCAGAGGGCCAACACGTGATTCAATGGGTGAGAGATCATTTAAAGAAGAAGAAAGATCCGATTTTGATAATGGATCCCAAACTCCAAGGTCGACCCGACCCGCAAATCCAAGAGATCCTCCAAACATTAGGAATTTCCCTACTTTGCACTAGCGATCGTTCTGAAGAAAGACCGACAATGAAAGACGTAGCAGCTCTTTTACGGGAGATCCAACAAGATCACTTGGCAAACGTAGTAGAGGCCATTGATAAGCCGCCACGAAACAATAGCAACGCAACAAGTTTGGAAACAACAACGTCATTTTCATCCTCCTCTTCTACAGCTCGTGCGAGTCATTTGCTTTTCACGTTGCCTCTTCAGGAGTCGTCACGTTGCTCATATGTGTCATTGTCCTCATCAAGCACGTATACGCCGCGTGAACAATGA 3405 48.11 MPVNSWTLPSSSILILILCFSVFYLFPLPTSAINEQGQALLTWKLSFNGSNQALRNWDPNNQTPCGWFGITCNTNREVVEVVLRDVELPGELPSNFSSLSSLNRLVLSGVNLTGSIPKEIGVLSQLRTLELSDNGLTGEIPSEICALLDLEQLDLNSNHLEGSIPAGIGNLTNLKELILYDNQLSGEIPISIGNLKQLEVIRAGGNKNLLGSVPEEIGNCSSLEILGLAETSISGFLPSSLGRLKKLQTLAIYTTLLSGQIPHELGDCTELQNVYLYENSLSGSIPSTLGRLQNLQSLLVWQNNLVGVIPMELSQCNQLLVIDISINSLTGSIPSTFGNLTLLQELQLSSNQLSGEIPKEIGSCSRITHIELDNNQLTGTIPSELGNLTNLTLLFLWQNKLEGSIPPTISNCGNLEALDLSLNALTGSIPTGIFELKKLSKLLLLSNNLSGVIPPAIGNCSSLFRLRANDNKLTGEIPPEIGNLKNLIFLDLGNNRLTGALPPEISGCRNLTFLDLHSNSLTKSLPEEFNQLSSLQYVDLSNNQIEGTPNPSFGAFNSLTKLILSNNHFSGPVPTEIGSCLKLQLLDLSCNQLSGNVPPSLGKIPSLEIGLNLSLNHLTGEIPPEFANLDKLGSLDLSYNQLSGDLHILADLKNLVVLNVSHNNFSGRVPETSFFTQLPLSVLSGNPDLCFAGEKCYADNHTGGGHHTLAARVAMVVLLCTACALLLAAVYIILKDRHSCRGCFNGSRGEDSDAAFDSDLELGSGWEVTLYQKLDLSISDVINCLTPANVIGRGKTGVVYRVCISSGLIIAVKRFRSSDKFSAAAFSSEVATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGELLHEGNGRVGLDWESRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEACLADFGLARLVEDGPSGSSSANPQFAGSYGYFAPEYGCMLRITEKSDVYSYGVVLLELITGKKPADSSFPEGQHVIQWVRDHLKKKKDPILIMDPKLQGRPDPQIQEILQTLGISLLCTSDRSEERPTMKDVAALLREIQQDHLANVVEAIDKPPRNNSNATSLETTTSFSSSSSTARASHLLFTLPLQESSRCSYVSLSSSSTYTPREQ 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 515742 520021 + CmoCh10G001170.1 Cmo10g00117 389463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00117 1134 Gene3D Ribonuclease Inhibitor 147 223 IPR032675 -
Cmo10g00117 1134 SMART serkin_6 785 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00117 1134 SMART LRR_typ_2 292 316 IPR003591 -
Cmo10g00117 1134 SMART LRR_typ_2 340 364 IPR003591 -
Cmo10g00117 1134 SMART LRR_typ_2 388 412 IPR003591 -
Cmo10g00117 1134 SMART LRR_typ_2 171 195 IPR003591 -
Cmo10g00117 1134 SMART LRR_typ_2 532 555 IPR003591 -
Cmo10g00117 1134 SMART LRR_typ_2 509 531 IPR003591 -
Cmo10g00117 1134 SMART LRR_typ_2 556 580 IPR003591 -
Cmo10g00117 1134 SMART LRR_typ_2 123 147 IPR003591 -
Cmo10g00117 1134 SMART LRR_typ_2 652 676 IPR003591 -
Cmo10g00117 1134 SMART LRR_typ_2 484 508 IPR003591 -
Cmo10g00117 1134 SMART LRR_typ_2 413 436 IPR003591 -
Cmo10g00117 1134 Gene3D Ribonuclease Inhibitor 228 333 IPR032675 -
Cmo10g00117 1134 Gene3D Phosphorylase Kinase; domain 1 767 860 - -
Cmo10g00117 1134 SUPERFAMILY RNI-like 276 643 - -
Cmo10g00117 1134 Gene3D Ribonuclease Inhibitor 428 698 IPR032675 -
Cmo10g00117 1134 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1080 - -
Cmo10g00117 1134 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Cmo10g00117 1134 Pfam Leucine rich repeat 509 569 IPR001611 GO:0005515
Cmo10g00117 1134 Pfam Leucine rich repeat 294 353 IPR001611 GO:0005515
Cmo10g00117 1134 ProSitePatterns Serine/Threonine protein kinases active-site signature. 906 918 IPR008271 GO:0004672|GO:0006468
Cmo10g00117 1134 SUPERFAMILY L domain-like 61 311 - -
Cmo10g00117 1134 Gene3D Ribonuclease Inhibitor 35 146 IPR032675 -
Cmo10g00117 1134 SUPERFAMILY Protein kinase-like (PK-like) 776 1060 IPR011009 -
Cmo10g00117 1134 PANTHER OS01G0170300 PROTEIN 3 1080 - -
Cmo10g00117 1134 Gene3D Ribonuclease Inhibitor 334 427 IPR032675 -
Cmo10g00117 1134 MobiDBLite consensus disorder prediction 1076 1096 - -
Cmo10g00117 1134 Pfam Protein kinase domain 789 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00117 1134 Gene3D Transferase(Phosphotransferase) domain 1 861 1083 - -
Cmo10g00117 1134 ProSitePatterns Protein kinases ATP-binding region signature. 791 813 IPR017441 GO:0005524
Cmo10g00117 1134 ProSiteProfiles Protein kinase domain profile. 785 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00117 1134 ProSiteProfiles Leucine-rich repeat profile. 631 653 IPR001611 GO:0005515
Cmo10g00117 1134 MobiDBLite consensus disorder prediction 1077 1096 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00117 Cmo18g00141 CCT
Cmo10g00117 Cmo11g00084 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00117 Cmo-Chr10:515742 Cmo17g00120 Cmo-Chr17:661522 0 dispersed
Cmo10g00117 Cmo-Chr10:515742 Cmo11g00084 Cmo-Chr11:394869 0 wgd
Cmo10g00117 Cmo-Chr10:515742 Cmo18g00141 Cmo-Chr18:1006291 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74594 PF00069 Pkinase 4.80E-39 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00117 - - cmos:111429763 2123.59