Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00123 ATGACGTCAAGTATGTTGAGTGGAGAAAGAAGGTGGACATCAGCCAGACGAGGTGGGATGACTGTTTTAGGAAAGGTTGCTGTTCCAAAACCTATAAACTTACCCAGTCAAAGGTTAGAAAATCATGGTTTGGACCCAAATGTGGAAATTGTACCCAAGGGTACCCTCAGTTGGGGCAATAAATCAACTTCATCTGCAACGAATGCTTGGGGCTCCTCATCTGGTTCTCCAAATACAGATAGTGCTTCTGGTTCACCAAGCCATCTCTGTGGTCGCCCTTCATCTGCTGGAGGTGGCACTCGTCCATCAACGGCTGGCAGTGACAGGTCCCATGAACCTCATGCTAATGCATGGGGTCCGAGTTCTAGGCCATCATCTGCCTCTGGGCCTGTGACGTTAAGTCATGCATCACTCGCATCCTTGCGCCCTCACAGTGCTGAAACTAAATCTAGTAGCTCACAATTGTCACGATTTGCAGAGACTTCTGAAAATCCAGTGGCTTGGAATTCTGCTGTGACTATAGAGAAAGTGGGAGCGATGCCATGTAAGAGTGATGGGTTTTCTTTGACATCAGGAGATTTTCCTTCGCTGGGTTCTGAGAAAGAATGTGTAGGAAAGGATGCTGGGTCACGAGATACTAGGTCTAGTGAAGGAGCTACAATGAAAGAGAGGACTGGAACTTCGGCAATCGATGACCCTAAAAATGTGACTACAAATGTTGAAAGTGCTAATTCGTGGAGAAGTGATAATCTTCCGCACAACGATGATGGGCCTAGGCCTAGTGTAGAGAAATGGCTGGGGCATCCCCATCCTTACCCTGGTGCAAATATTCCTCCCCCACATTATGATGCTTGGCATGGTTCTCCAGTAAACAATCCTCAAGGTGGTGTATGGTATAGGGGTCCTCCACAAGGAGGTCCTCCATATAGAACTCCAGTTGCTCCTGGTAATTTTCCTATGGACCCATTTCTGTATTATCCTCCACATATTCCCTCAGGCGGTCTTCCCAATCCCCAGCCTTCTCATGGAACTGGACCCAGGGGACATCATACTAAAACTGGAGATATGTATAGACCTCCTATGCATGATGGTTTTATTCATCCAGGCATGCCAATTAGACCTGGATTTTACCCAGGTCCAGTTACCTATGAGGGATATTTCCGTCCTCCCATGGGCTACTGCAATTCAAGCGATAGAGATGCTCCATTTATGGGAATGTCTGCTGGACCAGCTGGCCCTGCTGGCCCTGCTGTTTATAACAGGTACTTGGGCCAAGGCCAAATTGCATCTGAGCCTGCAAGTTCCCATCTGGTTCCAGAACAAGTAGAAGCTGGTCTTCCTTGTGATAATCAAGGACCATACAAGGTTCTTTTGAAGCAGCAGGGAAACTTAAATAGTAAGAACGAAGAAGAAAATAGGATAATCTCAACAACCACTAATCAGTTGATTGTTGAGAAGGATGACCAACAGAGGATGACTCCATGGGAGAATGACTGGGATCATAAAAAAGAAGTTGATTTGAGGAGAACGTTGGAGGTGGCACCATATTCTCAGGCTTCTGCCAACCAAGAAACTCAATCTGCTGAAAGTATGAAAGCCAAGTCTCATGGAAACGCGAAGATTGGTGATGGTTTGCAAGAAAAATCGGCTGCTGGTGGTGGTGGTTTCTCTGAAGTTCCCAAACCACTGGCAACTGCCACAAAAGATTCAAGTCTGATTCAGAAGATAGAAGGATTAAATGCCAAAGCCCGGGCTTCTGATGTGCGACATGATGTTTCACCTATTTGCAGGAGGGAGGAGCCAAATGAGCTTCAATTTAAAGATACACACTCTGATCATGTTATTGCCCAAGAAGCTAGTGCAACTGCTGTTTTTCCTGAAAATAGGGATTTTAATGAAGTCATAGACCCAGGCTCCAGTGAATTAAGTTTGTCCACTGTAGATAGGAATGTTAAATTATACGGTGGAGCACATGTCCACAGGAGGCCTAATCGTGGAATGCAAGGGAGAAGTGATCATCATGGCAGAGGAAAAGTCAATACACGGGAGGTTGATGGGTGGCATAAAAGACCTCTGTTGGACTCCCCAGGCATGATGGCAACTCCCAACCAGGAAAGTTCTGTGCTTGCAAGAGACGACAATGCTATAGGCGCTATTAATAAGGCTGAGTCATTTTCTTCAGATAGCCATGGAGATGTACCTACTCCATCCATGGGTAATTCAAAAGATACTCAAGCTCAGCGCACAAAGATGAGAGAGCTAGTAAAGCAACGCACCAAACAATTGCAGGAGGAAGAGGAGGAAAGGACTAGAAAACAGAGGGCCAGGGCCCTGGCAAAACTTGAAGAATTGAACAGGCGTACAATAGCAGGGGAGGGTCTGAATCAGTGGTCTGAATATGTTTCTAATGATGCCATAAGAAATAAGATACAAGAACCTCAAAATCTTGATGACCCAAGCACGCGTGGTAGTACTATATCTGGAGAGTATACCACAGTTTCTGATCCACACGTGGTTGCTAACAATAGTGAGTCAACTATGGGCACTAATAAAAATTCTCCCATTTTATCAGGAGATGCCCAATCGAAGAAACCAAGTAGTAGCAGTAAGGAACAGGTTGTGGCACATAATCAATTGAGAACTTTGGAGCTGGAGGCAAGCATTAATGATGCAGTCCAAAAGAAGAATGCTTCGGAGGTAAATGGGGGCGGTGCATCCTTGAAGCACAAGCGTACAGGAAATAAACAAAAACCAAATATTCCATCTGAAAAGACTGAAAAGATTCCCCACTTAATTAAGGATTCAAAAGTTCAGACAGTTGTTGCTGACATTTCAGTTGTAGACGAGTCGAGTGCTATCATTACAGAACCTGTTGCTGAACATTCCACCCATGCAAGAAAGAAAAATAACAAGAGTGGGAAGAGCAGGCACAAAGTGGAAGAGACCTCGATATCTGCATCACCACCTCAAATTTCAAAAGAGGCAAATCTTACAACGGAATATGATAAACCAAAGGCTTCTCAATCGGTAATGGATCCACCTTCAGATCCACAACCGCCAATTAATGGAGATGAAAATCAGTCCAGAGAGCAGCTACCTCTGTTACCAGTTGTAGAAACTCTTGGCAAAGGTAACGGTCAGTGGAAGTCTCAGCATTCTCGCAGGATGCCAAGAAATGCTCAAAATAGACCAGGAGAAAAGATCCATGGGAGTGATTCTGTTATCTGGGCCCCTGTGCGATCTCTCAACAAATGTGAGATTACGGATGAAACTCTTCATAAAAATGAAGCTGGGGCTGTTACTTCATCTGTAAAGATTGATAATCAAGTGCAGAGTATGCCAAAGAACAAGCGAGCTGAAAGAGAGATATATGTACCGAAGCCAGTAGTCAAGGAAATGGCACAGCAAGGAACCATCCATCAAGATATTTTCCCCATGAACCAGGCGCAAGATGATAATAAGGCAGATTCTAGTTCCAAAAGTTCTGATAATACTCGACCTGCTGGTGCTGTTTCTGGTAATGTGGGATTTTCCACAGATCACAGAAACGGGGATGGTAGGCACCATAAACAAAGCAAGGCACATGCATCGTGGCGCCAACGGGGAGCCACAGAATATGGGCAAGGCTTACTAGACCAATCATCTTATGTTTCAAATGCTGCTGGTAGTTTTGTTCAAAAATCAACTGAATATCAAGTACCTGAGAAGGCTACTGGAAGCACCATCAATGAGTTTACGAGCCACGTTGATGAGTGGGATCCACCCGATGGATGGAACGATCCCAACTTCTCAGCCTCTATCCCAGTTGTCACTGCAGCTGTTGGGAGAGACCAGGGGGTGACAAGCAGGGGAAAACGGTCCCAATTTAAGGGGCACAAGGGTGTAGGGAACAATTTTGATTTGAATGAAAAGAAACTTAGAAGTGGAGACGATGAAAAAAATTCTTCCCAATCCTCAGTGCTCGGGGCAGATCAAAAAGATGTATTTGCTGCTGCCAAAGAAAATCGGGGTGTTGGGGAGCGTTCAACATCTCATTGGCAACCCAAATCCCGGATGGTTCAGCCCCACAATCATCAAAATAGCAAGCCTAGTGGTGATCAAAATGCTGAAGCTGAAGCTGGACAGACTAATAAAATTGGATCTAGGCCATTTTCACATGCCACAAATACGAGTGATGATGTGGCCCAAAATCAGTCCGATAGGTTTTCTGGTGCAAGAACCGTCATGGAAGAAGGACCAGATGTTGGTCCTCATGGGGCCAGAGTAGAGAAGAAAATTTACTCCCGCAAAGATCGTCCTTACTCCCCAGTCGAAGGTCCTATCCATACCGTTGAGGTTGCTCCAGCAAATACAGATACCAGACGCGATCAACCGTTGCCTACATTTTATCATAAAGGCGGTGAGAACAATAACCGCTTTGGACGAGGGCCAGAATCTCGTCGGGAAAGGAATTCCTCTCAACATCATAAGCAGCAGCATTATCCACCTGCTAATAGAGACAGGCAAAGACAAAATTTGCAGTACGAGTACCAACCAGTTGGGCCACATAATGGAAAGCCGAACATGGATAATAGACCTAAGGATACCACACAGCATTCAGGATCAAGGTACGTGGAGAGGGGCCAAGGTCAGTCCAGAAGAGATGGTGGGAACTTCCACAAGCAACAAGGTGGACCAGTTTGA 4683 45.38 MTSSMLSGERRWTSARRGGMTVLGKVAVPKPINLPSQRLENHGLDPNVEIVPKGTLSWGNKSTSSATNAWGSSSGSPNTDSASGSPSHLCGRPSSAGGGTRPSTAGSDRSHEPHANAWGPSSRPSSASGPVTLSHASLASLRPHSAETKSSSSQLSRFAETSENPVAWNSAVTIEKVGAMPCKSDGFSLTSGDFPSLGSEKECVGKDAGSRDTRSSEGATMKERTGTSAIDDPKNVTTNVESANSWRSDNLPHNDDGPRPSVEKWLGHPHPYPGANIPPPHYDAWHGSPVNNPQGGVWYRGPPQGGPPYRTPVAPGNFPMDPFLYYPPHIPSGGLPNPQPSHGTGPRGHHTKTGDMYRPPMHDGFIHPGMPIRPGFYPGPVTYEGYFRPPMGYCNSSDRDAPFMGMSAGPAGPAGPAVYNRYLGQGQIASEPASSHLVPEQVEAGLPCDNQGPYKVLLKQQGNLNSKNEEENRIISTTTNQLIVEKDDQQRMTPWENDWDHKKEVDLRRTLEVAPYSQASANQETQSAESMKAKSHGNAKIGDGLQEKSAAGGGGFSEVPKPLATATKDSSLIQKIEGLNAKARASDVRHDVSPICRREEPNELQFKDTHSDHVIAQEASATAVFPENRDFNEVIDPGSSELSLSTVDRNVKLYGGAHVHRRPNRGMQGRSDHHGRGKVNTREVDGWHKRPLLDSPGMMATPNQESSVLARDDNAIGAINKAESFSSDSHGDVPTPSMGNSKDTQAQRTKMRELVKQRTKQLQEEEEERTRKQRARALAKLEELNRRTIAGEGLNQWSEYVSNDAIRNKIQEPQNLDDPSTRGSTISGEYTTVSDPHVVANNSESTMGTNKNSPILSGDAQSKKPSSSSKEQVVAHNQLRTLELEASINDAVQKKNASEVNGGGASLKHKRTGNKQKPNIPSEKTEKIPHLIKDSKVQTVVADISVVDESSAIITEPVAEHSTHARKKNNKSGKSRHKVEETSISASPPQISKEANLTTEYDKPKASQSVMDPPSDPQPPINGDENQSREQLPLLPVVETLGKGNGQWKSQHSRRMPRNAQNRPGEKIHGSDSVIWAPVRSLNKCEITDETLHKNEAGAVTSSVKIDNQVQSMPKNKRAEREIYVPKPVVKEMAQQGTIHQDIFPMNQAQDDNKADSSSKSSDNTRPAGAVSGNVGFSTDHRNGDGRHHKQSKAHASWRQRGATEYGQGLLDQSSYVSNAAGSFVQKSTEYQVPEKATGSTINEFTSHVDEWDPPDGWNDPNFSASIPVVTAAVGRDQGVTSRGKRSQFKGHKGVGNNFDLNEKKLRSGDDEKNSSQSSVLGADQKDVFAAAKENRGVGERSTSHWQPKSRMVQPHNHQNSKPSGDQNAEAEAGQTNKIGSRPFSHATNTSDDVAQNQSDRFSGARTVMEEGPDVGPHGARVEKKIYSRKDRPYSPVEGPIHTVEVAPANTDTRRDQPLPTFYHKGGENNNRFGRGPESRRERNSSQHHKQQHYPPANRDRQRQNLQYEYQPVGPHNGKPNMDNRPKDTTQHSGSRYVERGQGQSRRDGGNFHKQQGGPV 1560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 544542 552836 + CmoCh10G001230.1 Cmo10g00123 389469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00123 1560 Coils Coil 748 787 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 1275 1560 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 665 680 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 1149 1179 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 722 745 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 295 314 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 230 251 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 204 219 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 56 90 - -
Cmo10g00123 1560 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1555 - -
Cmo10g00123 1560 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1555 IPR038808 -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 1044 1058 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 895 931 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 1341 1404 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 1043 1069 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 119 163 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 189 272 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 722 748 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 1297 1312 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 809 875 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 1149 1201 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 1474 1497 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 916 931 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 54 163 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 957 1031 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 1416 1436 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 982 1005 - -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 660 680 - -
Cmo10g00123 1560 Pfam BAT2 N-terminus 13 135 IPR009738 -
Cmo10g00123 1560 MobiDBLite consensus disorder prediction 329 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00123 - - - csv:101207575 2489.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00123 Cmo11g00088 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00123 Cmo-Chr10:544542 Cmo11g00088 Cmo-Chr11:417730 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g781 . . . . . . . . . . Cma10g00119 Cma11g00088 Car10g00106 Car11g00079 Sed08g0103 . Cpe04g01566 Bhi02g00478 Tan09g2266 Cmetu02g1512 . Hepe09g0213 . . Cla06g01673 Cam06g1861 Cec06g1911 Cco06g1916 Clacu06g1817 Cmu06g1758 Cre06g2575 . . . . . . . . . Blo15g00262 . . Bpe07g00848 . . . . Cmo10g00123 Cmo11g00088 . . . . . Cpe18g00849 . . . . . . . . . . . . . . Lsi06g01564 Csa01g00136 Chy02g02591 Cme02g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006102 0 1 1 0 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00123 Cmo_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0