Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00132 ATGCGAAATCAGCAGTTGCAGTTGCAGTTGCAGGCGTCGCCGGTGGGAGAGAGGTCGCGCTCTTTCTCTGCAGGGCGCCCCCGAGCGCAATCATTAGGCGTTTCTTCTTCATGGGATTCTGTTGAGGTGCTGGTTTTGATTCTATTTTTAGATTCTGGTTCCCCGCTGATTTTGAAAAATCGTGAGATGCCGGGAATTGTCATGGATGAGATTAATGAAGAAAGGGCTGTGAATAAACACCACGGTTCTTCAATTCATATGGAAGAGTCGTATGGAAACAAGTCGCCGAGGAGCGGGTTGAGTCTTCAGAGCCCTGGAAGTGTTCATATCCATTTCCCTGTTGATGGCTTGGTTGATACCTCTATTGAGAAGCTCTATGAAAATGTTTGTGATATGCAAAGTTCGGATCGGTCACCTTCAAGGCGTAGCTTTGGTTCTGATGGTGAGGAATCCAGGATTGATTCTGAACTGAATCATCTTGTAGGGGGAGAGATGAGGGAGGTAGAGATAATAAAGGAGGAAGAGGAGATTGTTGAGAAGCCTGAACATAACTTGCCTAGTGAATCTATGAATCATTCACCATCTGCCGATAAGGAGAAAACAGAAAATACACAACCTGGGAGCTCGAAACGTCTTTCTTCTGGAAGAAAAGCTACTCACCTGCATTTGGACCTGGAGACATCGTCGAAATCAAGTCCCAGGGGCAAGCGTTTGTCTGATAAGCCCCCTTTTAGCAAGAAGAATGAAAAGAATTTGAAAAGTCCAGTTGCTAGTCACTCAAAGAAACCGAAAGATTCACCTTTGAGAGGCTCAAAACTGCTGAATGGAACGGAGGATTTCAACGAATCAACGATGGATAATCCTGATCTAGGACCCTTTCTACTTAAGCAAGCAAGGAATTTAGTTTCTTCAGGGGAGAATCTGCAGAAAGCGCTTTTATTAGCTCTTCGTGCTGCAAAATCTTTTGAGCTATCTGCAAATGGGAAACCCAGCTTAGAACTTGCTATGTGTTTGCACGTGACAGCAGCAATATACTGCAGCTTAGGCCAATACAGTGAGGCAGTACCTCTATTGGAGCATTCGATTGAGATTCCTGCCATTGAGGAAGGCCACGAGCATGCATTGGCAAAATTTGCAGGCCACATGCAGTTGGGTGATACCTATGCAATGTTGGGCCAGCTGGAAAATTCTCTAGTCTGTTATACAACTGGTTTAGAGGTGCAGAAACGAGTGCTAGGAGAATCCGACCCCAGAGTTGGTGAGACGTATAGGTATTTAGCTGAAGCCCATGTTCAAGCCTTGCGATTTGATGAGGCTGAGAAATTTTGTCAAATGGCTCTTGATATTCACAAAAAGAATGTTGGTCCTGCTTCTCTTGAGGAGGCTGCAGATAGGAGGCTTATGGGTCTCATATGTGAAACGAAAGGAGACCATGAAGCTGCGCTCGAGCATCTAGTCTTAGCCAGCATGGCCATGGTGGCCAATGGCCAGGAGACTGATGTGGCTGCAGTTGATTGCAGTATTGGAGATTCATACTTATCCTTGTCACGTTACGACGAGGCTGTTTTTGCTTATCAGAAAGCCCTCACTGTTTTCAAGACCACGAAGGGAGAAAACCATCCAGCAGTTGGTTCGGTATTTGTTCGTCTTGCTGATTTATACAACAAGACTGGAAAAATGAGGGAGTCAGAATCATACTGTGAAAACGCCCTTCGAATTTACGAAAAGCCTGTCCCTGGGATTGCTCCAGAGGAGATTGCCAGTGGTCTTACTGATATTGCTGCTATTTATGAATCAATGAATGAAGTTGAGCAAGCAATCAAATTATTACACAAGGCATTGAAAATATATAATGATGCCCCCGGACATCAAAACACCATTGCTGGAATTGAAGCCCAGATGGGTGTCTTGTATTATATGTTGGGGAAATATTCTGAATCTTACGACTCCTTCAATAATGCAATTCCTAAGCTCCGCAGCAGCGGAGAGAAAAAATCTGCTTTTTTTGGTATAGCCCTGAATCAAATGGGGCTTGTGTGTGTTCAGAAATACGCCATAAACGAAGCCGTGGAGTTATTTGAAGAAGCCAAGAGCATACTAGAAAAAGAATACGGACCGTATCATCCCGATACTCTCGGGGTATATAGCAACCTTGCTGGAACATACGATGCGATTGGCAGGTTGGATGATGCAATTGAAATCTTGGAGTATGTTGTTGGCATGCGAGAGGAAAAACTCGGGACAGCAAATCCCGACGTCGACGATGAGAAGAGGAGGTTGTCCGAGTTGCTAAAAGAAGCAGGTAGAGTTCGGAGCCGAAAGGCGAGATCGCTTGAGACTCTTCTCGATTCCAATACTCAACCTGGAAACACTCTCTCCCAATACACGGGTTCTTCCACTCGCCGACTGCGAGTACAAGATATCGTTTACTTTGTACGAATTTTTGTTTCTATAATCATGGTTGAAAAATCTTCTAGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTTCCAGGAGATGTGGTTCTCGACCTCTCAAACATGGCCAATGAGACCCTCAAGCTTGGAGGCGGTCTTCGACAGGTGTCTGTTAGGGTTTTACTTTTTCCAATGTTTATGCAATCTTCTATTTATTTCGAATTTCGTTCAGGTTTCGGCAATCAAAGTGCAATTGTGTTGGTTACTGGATCGCTTACCTTCATTTTTTTTGTTTTAATCTGTCAGGACCACGATGCTATTTCTGTCTCCAAAGTTGGAAAGCTGAGGTTCTCGAAGCCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGTGGAAGATTGTGTTCTTGGAATCGTGGTTGACTCTAGAGCCGATAATTTTCTTGTTGATATAAAAGGTCCGGCATTGGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACCAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGAGGGTAGTGAAGGCAAACCCTGGTATGAATCCTGAGTTGGCATGCACTGATGCCAGTGGGAAAGCAGCTGGATTTGGCCTCCTAAAAGATGGCTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCAACATGTCCAGTTCTTGAATCTTTTGGGAAAAAGCTTTCATTCGAGACAGCAGTTGGTTTAAATGGCCGAGTTTGGGTGAATGCTGATTCTCCGTCCACAACCATTGTAGTTTCAAATGCAATATTGAACTCCGAGACTCTGTCTGGGGTCCAACAGAGAATCATGGTGGACAAGCTCCTTAACAATTTAAAGCTGTCAACTCCAGCTCCTGCACGAGCTACGATTGAGGATCGTGGGGATGCGAAGGCGGAGGTTGAGAAGCAAACCTCTCCGCCATCGGTGTTAGTGAACTCTGAACCAATAAGAGAGGATCAAGTGCAAAATGCTGTGAAATTTCTTCAACATCCGAGAGTAAGAGGTTCTCCTGTTGTCTACAGACGATCGTTTTTAGAGAAAAAGAATCTCACGAAGGAAGAGATTGATGAGGCATTCAGGCGTGTGCCCGACCCGCCTTCTAATGCACAGACAGCTACTGTGAGTCAAGATGGACCGGTGAACACAGTTCAGCCACAGCCCTCTACACAATCTCTTCAAACAGTTTCAGGTGTCGCTCCCCCTGCTGGTGGTGTATCTCGCCAGGGTACCGTCACACGGTCTAGATTCCATTGGTCACAGGCCATTCTCGCTGTAGGATTATTGGCTATTTCAGGTGTTGGAACAGTTGTAGTAATCAAGAATTCTATTATTCCTAGGTTGAAATCTTGGGTGCGTAAAATTGTATTAGAAGACGAGGACATTGAGAAGAAAATTAATTCAAAACCAAGTGCAGCTGAGGAAGCAGCTGCTGCTGCCAAAGCAGCAGCAGCAGCAGCATCTGATATGGCAAAGGCGAGTCAGGAGATGCTGTATTCAAAAAGTGAAGCTTGGGCAGATGAAGTTGATGCTGAATGCCATTCAGAAATTGGAAGGTTTCAAGTTCATGTGATATGCGATATGTTTGATTTATACAGTCGTTTGGTTAGAACATATTTGCAAATGACATTTCGGAACCACGTATGGAAGAACTACTACTGTCGATCAACAAGATTATCGAATTACTGCCATGAGTTCAAAGGTGAGCTCAAAGTGCAGCCATATTCCAATGGCAAGGTGGAATCTAGCGTGCAATCAGCTACACCTGCCATACCTGTTGAACCCTCAGTTGCACCACACCCCAAATCTTACATGGAGATCATGGCCATGGTCCAGAGAGGAGAAAAGCCATCTAATATTAGAGACATTGATGATTTACCTCCCAACCCAAATCAACAGCCATCAAATCCTCGTCTAGCTCCTAGAGCCAAGCCTTGGGAGGTTGGTACGCAAAACAATCCTGGCTTTTTCTATCAATCTCAAGAAAATGACAGTTCGAATTCCATGGTACAAAACAATGGCGTGACCTACATGAACAACAATGCTCCAGTGCCTTGGTGGCAGAAGAGAAATGTTAATATTACAGAGATTGAAAATCATGAGTTGAAGGTAGGCTCTTCCAATGGGCTCTCTGCTGAGAAACCAGTTCAACGTACATGGGTTCCTCCTCAGCCACCACCTGTTGCATTGCCAGAAGCAGCTGAAGCCATTCGAAGGCCAAAACCAACTATCCAGAAAGAGCAGCTTACTGACGAACATTTAGCAACACAACCAAATGTCACTGATGAGTTTCAGAAGGCCACAAAAGTTTCTGAATCTGGGGGAGCAATCGATTATGAGAACTTGGGAGTGAGCTCAAGTGAGATACAAGTGGAAGAAAATGGCTCCGGAGGACAATGA 4878 44.69 MRNQQLQLQLQASPVGERSRSFSAGRPRAQSLGVSSSWDSVEVLVLILFLDSGSPLILKNREMPGIVMDEINEERAVNKHHGSSIHMEESYGNKSPRSGLSLQSPGSVHIHFPVDGLVDTSIEKLYENVCDMQSSDRSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEEEIVEKPEHNLPSESMNHSPSADKEKTENTQPGSSKRLSSGRKATHLHLDLETSSKSSPRGKRLSDKPPFSKKNEKNLKSPVASHSKKPKDSPLRGSKLLNGTEDFNESTMDNPDLGPFLLKQARNLVSSGENLQKALLLALRAAKSFELSANGKPSLELAMCLHVTAAIYCSLGQYSEAVPLLEHSIEIPAIEEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKRVLGESDPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKGENHPAVGSVFVRLADLYNKTGKMRESESYCENALRIYEKPVPGIAPEEIASGLTDIAAIYESMNEVEQAIKLLHKALKIYNDAPGHQNTIAGIEAQMGVLYYMLGKYSESYDSFNNAIPKLRSSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEKEYGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARSLETLLDSNTQPGNTLSQYTGSSTRRLRVQDIVYFVRIFVSIIMVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETLKLGGGLRQVSVRVLLFPMFMQSSIYFEFRSGFGNQSAIVLVTGSLTFIFFVLICQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSTPAPARATIEDRGDAKAEVEKQTSPPSVLVNSEPIREDQVQNAVKFLQHPRVRGSPVVYRRSFLEKKNLTKEEIDEAFRRVPDPPSNAQTATVSQDGPVNTVQPQPSTQSLQTVSGVAPPAGGVSRQGTVTRSRFHWSQAILAVGLLAISGVGTVVVIKNSIIPRLKSWVRKIVLEDEDIEKKINSKPSAAEEAAAAAKAAAAAASDMAKASQEMLYSKSEAWADEVDAECHSEIGRFQVHVICDMFDLYSRLVRTYLQMTFRNHVWKNYYCRSTRLSNYCHEFKGELKVQPYSNGKVESSVQSATPAIPVEPSVAPHPKSYMEIMAMVQRGEKPSNIRDIDDLPPNPNQQPSNPRLAPRAKPWEVGTQNNPGFFYQSQENDSSNSMVQNNGVTYMNNNAPVPWWQKRNVNITEIENHELKVGSSNGLSAEKPVQRTWVPPQPPPVALPEAAEAIRRPKPTIQKEQLTDEHLATQPNVTDEFQKATKVSESGGAIDYENLGVSSSEIQVEENGSGGQ 1625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 597207 608021 - CmoCh10G001320.1 Cmo10g00132 389478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00132 1625 Gene3D - 1135 1202 IPR036388 -
Cmo10g00132 1625 Coils Coil 753 773 - -
Cmo10g00132 1625 MobiDBLite consensus disorder prediction 1188 1235 - -
Cmo10g00132 1625 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 63 785 - -
Cmo10g00132 1625 Gene3D Tetratricopeptide repeat domain 489 670 IPR011990 GO:0005515
Cmo10g00132 1625 Gene3D - 906 939 - -
Cmo10g00132 1625 MobiDBLite consensus disorder prediction 1444 1469 - -
Cmo10g00132 1625 MobiDBLite consensus disorder prediction 130 286 - -
Cmo10g00132 1625 Pfam Tetratricopeptide repeat 334 364 - -
Cmo10g00132 1625 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 63 785 - -
Cmo10g00132 1625 MobiDBLite consensus disorder prediction 217 268 - -
Cmo10g00132 1625 ProSiteProfiles TPR repeat profile. 587 620 IPR019734 GO:0005515
Cmo10g00132 1625 ProSiteProfiles TPR repeat profile. 502 535 IPR019734 GO:0005515
Cmo10g00132 1625 MobiDBLite consensus disorder prediction 142 186 - -
Cmo10g00132 1625 Pfam Pex14 N-terminal domain 1144 1188 IPR006785 -
Cmo10g00132 1625 MobiDBLite consensus disorder prediction 1 30 - -
Cmo10g00132 1625 Pfam Family of unknown function (DUF5572) 1425 1474 - -
Cmo10g00132 1625 MobiDBLite consensus disorder prediction 1193 1224 - -
Cmo10g00132 1625 SUPERFAMILY Ribosomal L27 protein-like 907 936 - -
Cmo10g00132 1625 Pfam KH domain 1025 1073 IPR004088 GO:0003723
Cmo10g00132 1625 Gene3D - 944 1020 IPR012340 -
Cmo10g00132 1625 SUPERFAMILY Nucleic acid-binding proteins 936 1028 IPR012340 -
Cmo10g00132 1625 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 1024 1106 IPR036612 GO:0003723
Cmo10g00132 1625 CDD S1_Rrp40 937 1022 IPR037319 GO:0003723
Cmo10g00132 1625 Gene3D Tetratricopeptide repeat domain 682 782 IPR011990 GO:0005515
Cmo10g00132 1625 SMART tpr_5 712 745 IPR019734 GO:0005515
Cmo10g00132 1625 SMART tpr_5 628 661 IPR019734 GO:0005515
Cmo10g00132 1625 SMART tpr_5 335 368 IPR019734 GO:0005515
Cmo10g00132 1625 SMART tpr_5 670 703 IPR019734 GO:0005515
Cmo10g00132 1625 SMART tpr_5 544 577 IPR019734 GO:0005515
Cmo10g00132 1625 SMART tpr_5 420 453 IPR019734 GO:0005515
Cmo10g00132 1625 SMART tpr_5 502 535 IPR019734 GO:0005515
Cmo10g00132 1625 SMART tpr_5 587 620 IPR019734 GO:0005515
Cmo10g00132 1625 SMART tpr_5 378 411 IPR019734 GO:0005515
Cmo10g00132 1625 Pfam Tetratricopeptide repeat 383 452 - -
Cmo10g00132 1625 Pfam Tetratricopeptide repeat 671 738 - -
Cmo10g00132 1625 Pfam Tetratricopeptide repeat 501 576 - -
Cmo10g00132 1625 Gene3D Tetratricopeptide repeat domain 293 488 IPR011990 GO:0005515
Cmo10g00132 1625 Gene3D K Homology domain, type 1 1021 1104 IPR036612 GO:0003723
Cmo10g00132 1625 SUPERFAMILY TPR-like 309 747 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00132 - - - bhj:120070989 1319.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00132 Cmo11g00097 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00619 Cmo-Chr4:3081733 Cmo10g00132 Cmo-Chr10:597207 0 dispersed
Cmo10g00132 Cmo-Chr10:597207 Cmo16g00575 Cmo-Chr16:2778554 0 dispersed
Cmo11g00097 Cmo-Chr11:516889 Cmo10g00132 Cmo-Chr10:597207 0 transposed
Cmo17g01313 Cmo-Chr17:10275685 Cmo10g00132 Cmo-Chr10:597207 8.22E-07 transposed
Cmo10g00132 Cmo-Chr10:597207 Cmo11g00095 Cmo-Chr11:511533 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00132 Cmo_Chr10 FPKM 0.360587 0.440462 0.309257 0.334738 0.146432 0.11086 0.0 0.714744 0.564125 0.807595