Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00136 ATGGCTGCTCGAGGGGTCGATTTCAAGTGGTATGACGGTTTTTTCTTGTCGATGCTCGCGATTAGTGTAGTAGTTGTTTCGATCAACTGGAAGAGGTACCATACTTGTGTACATCCCTTGCATATATGGATTTTGGTTGATTATACTACCGTCTTTGTTTTCCGTCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGGTATGCTCGATTCTGTGGAAGAATTGTGGTCCTTTCAATCCTTGCACTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATCGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTTTTGAGCAAGGCCAGAAATGGGGATTCCTTATTTGGCTTCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCGTGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCCGCAGGACAAGAAACAAGAGTAATGGGCCAAGATGCTGCTGCATATCATCCTGGACTTTATTTGACTCCTGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGCTTAGAAGAGTTCCATGTAGGGAACGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGACGAGTGGCTTCGACTAAATGTGAAATGCCCTAGATGTCGCTGCTCAGTCTTCCCAAACCTCGATCTTAGTGCTCTGTCCAATCTTCATTCTGATACTGAAAGGCCATCTGCAAGTGTTGTTACGGCCAACCGTTATATGAGACCTCAACCTTCCAGCCAAAGTTATCTGGTGAGATTGCAGGGTCTGCTTCGGCCTGTTCGCACAGAAAACACTGTTGCACACTGTGATTTAGAGTCTGCTAGTGCTTTGGAAGTTGCTGAGAATGCTGAGAATGGATCTTCCCATGACCAAACTATACCGGAAAGGTCTCCCGTAAGACCCATGCCTTTGAGTCAGTCCACGTCACAACGCTAG 1143 46.02 MAARGVDFKWYDGFFLSMLAISVVVVSINWKRYHTCVHPLHIWILVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSILALLLYPFLWAWTAIGTLWFREAHKCLFEQGQKWGFLIWLLFSYCALVCIACVSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLHSDTERPSASVVTANRYMRPQPSSQSYLVRLQGLLRPVRTENTVAHCDLESASALEVAENAENGSSHDQTIPERSPVRPMPLSQSTSQR 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 625356 629571 - CmoCh10G001360.1 Cmo10g00136 389482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00136 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 354 - -
Cmo10g00136 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Cmo10g00136 380 SMART ring_2 235 275 IPR001841 -
Cmo10g00136 380 MobiDBLite consensus disorder prediction 349 380 - -
Cmo10g00136 380 MobiDBLite consensus disorder prediction 349 363 - -
Cmo10g00136 380 Pfam Ring finger domain 234 276 IPR001841 -
Cmo10g00136 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 354 IPR044793 GO:0004842|GO:0010182
Cmo10g00136 380 SUPERFAMILY RING/U-box 216 284 - -
Cmo10g00136 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Cmo10g00136 380 CDD RING-H2_RNF111_like 234 278 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00136 Cmo18g00124 CCT
Cmo10g00136 Cmo11g00101 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00136 Cmo-Chr10:625356 Cmo02g01194 Cmo-Chr2:7148547 8.93E-13 dispersed
Cmo10g00136 Cmo-Chr10:625356 Cmo11g00101 Cmo-Chr11:539352 0 wgd
Cmo10g00136 Cmo-Chr10:625356 Cmo13g00922 Cmo-Chr13:8143395 2.78E-172 wgd
Cmo10g00136 Cmo-Chr10:625356 Cmo18g00124 Cmo-Chr18:879086 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00136 K16284 - csv:101208939 728.013