Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00138 ATGAAGGAGAGCAATGATGGATTTGTGCGGGCGGATCAGATTGATCTGAAGAGTTTGGATGAGCAGCTTGAGAGGCATCTTAGCAGAGCCTTGACCATGGAGAAGAACAAGAAGAAAGATGAAGACGGTAATAGCTTTCTCACTTCTGCAACCATTGCTCGCAGTAGGTCTACTAAAGTCGCCGCTAAGGAGCGGCAAGAGTGGGAGATCGATCCGTCCAAACTGATAATCAAGAGCGTCATTGCTCGTGGTACTTTCGGCACCGTCCACCGCGGCGTTTACGACGGACTAGATGTCGCTGTCAAGTTGCTGGATTGGGGAGAAGAAGGCCACAGGACAGAAGCTGAAATTGCTTCACTCAGGGCAGCCTTTAAACAGGAAGTTGCTGTTTGGCATAAACTAGAGCATCCCAATGTTACTAAGTTTATAGGGGCAACAATGGGCTCAGCGGAGTTACAGATCCAAACTGAAAATGGCCTAATAGGCATGCCAAGCAACATATGCTGTGTTGTGGTGGAATATCTTGCCGGTGGTGCCCTTAAATCCTATCTCATAAAGAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAATTGGCACTTGATCTTGCTAGAGGGTTGAGTTACCTTCATTCACAGAAGATTGTTCACAGAGATGTAAAGACAGAAAACATGCTGTTGGACAAAACACGTACAGTAAAAATTGCTGATTTTGGTGTTGCTAGAGTTGAGGCCTCAAATCCCAACGACATGACTGGGGAGACTGGGACACTTGGTTACATGGCTCCTGAGCTAACTCATACGACATTTTCGAGCATTGTCCATAAAATGTTTCCCTTTGATTCCGTAGCTGTGTTCCTCATTCACTACATGGAAACTAGAAACCTTCAATGCCAAAATGTTCTCAATGGAAACCCATATAACAGGAAGTGCGACGTGTACAGCTTCGGTATCTGCCTGTGGGAAATCTATTGCTGTGACATGCCATATCCTGACCTTAGTTTCTCCGAAGTGACTTCTGCTGTGGTTCGTCAGGTAGATTCTTACGCCCTTAGTTCTTCATATCTGCAGGACAATTTCGTTATTTTGAACTTATCAAATGTTAATCTCAAAACACTGCAGAATTTGAGGCCAGAGATACCGAGATGTTGCCCGAGCTCCCTAGCAAATGTGATGAAGCGTTGTTGGGATGCAACCCCGGACAAGCGGCCCGAAATGGATGAAGTAGTTTCTATGTTGGAAGCCATTGACACGTCCAAGGGTGGAGGTATGATCCCTGTTGATCAAGCTCAGGGTTGTCTATGCTTTCGAAAATATAGAGGACCCTAA 1332 45.72 MKESNDGFVRADQIDLKSLDEQLERHLSRALTMEKNKKKDEDGNSFLTSATIARSRSTKVAAKERQEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKLLDWGEEGHRTEAEIASLRAAFKQEVAVWHKLEHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPELTHTTFSSIVHKMFPFDSVAVFLIHYMETRNLQCQNVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQVDSYALSSSYLQDNFVILNLSNVNLKTLQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQAQGCLCFRKYRGP 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 636719 640290 + CmoCh10G001380.1 Cmo10g00138 389484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00138 443 Gene3D Transferase(Phosphotransferase) domain 1 176 430 - -
Cmo10g00138 443 PIRSF ILK 39 296 - -
Cmo10g00138 443 PIRSF ILK 360 423 - -
Cmo10g00138 443 PIRSF ILK 294 349 - -
Cmo10g00138 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Cmo10g00138 443 SMART serkin_6 75 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00138 443 ProSiteProfiles Protein kinase domain profile. 75 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00138 443 PANTHER - 367 437 - -
Cmo10g00138 443 Coils Coil 16 36 - -
Cmo10g00138 443 PANTHER - 1 267 - -
Cmo10g00138 443 PANTHER - 299 346 - -
Cmo10g00138 443 CDD STKc_MAP3K-like 81 414 - -
Cmo10g00138 443 Gene3D Phosphorylase Kinase; domain 1 63 158 - -
Cmo10g00138 443 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 367 437 - -
Cmo10g00138 443 SUPERFAMILY Protein kinase-like (PK-like) 60 416 IPR011009 -
Cmo10g00138 443 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 299 346 - -
Cmo10g00138 443 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 267 - -
Cmo10g00138 443 Pfam Protein tyrosine and serine/threonine kinase 77 414 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00138 Cmo11g00102 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00138 Cmo-Chr10:636719 Cmo17g01175 Cmo-Chr17:9450541 1.73E-161 dispersed
Cmo20g00356 Cmo-Chr20:1746829 Cmo10g00138 Cmo-Chr10:636719 3.14E-23 dispersed
Cmo10g00138 Cmo-Chr10:636719 Cmo11g00102 Cmo-Chr11:544268 0 wgd
Cmo10g00138 Cmo-Chr10:636719 Cmo11g01694 Cmo-Chr11:11996809 0 wgd
Cmo10g00138 Cmo-Chr10:636719 Cmo14g00661 Cmo-Chr14:3358166 3.03E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74595 PF07714 PK_Tyr_Ser-Thr 1.50E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00138 - - csv:101209182 722.235