Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00139 ATGCATAACATTGCGTATTCTCGTTTGGGCGACCTTCAAAAATCCTTTTCTCTGTACCGGAAAGTGCCTTGGTGGGATCATATTCTTGAACCAGATTCCGATTTCGTCTTCCGATGGCACCGCATCTTCCTCGTTACTTGCTTGATCGCGCTCTTCGTCGATCCTCTCTACTTTTATCTTCCATTCATCGGCGCTCCTGGTTGTATGCAATTCAACCTCGGACTTGGCATCGTCGTCACTTTCTTCCGCACCATCGTCGATTTGTTCTCCATGTTTCATATGCTTATGAAGTTTCGCACAGCCTTCGTTGCGCCAAATTCTAGGGTTTTTGGCCGTGGAGATCTCGTTAAGGACCCTACGGCAATTGCTATGCGCTACCTCAAGAAGGATTTTGTCATCGATCTTGCCGCTACGCTTCCCCTGCCTCAGATTGTGATTTGGTTCGTGCTTCCAGCGTTAAAAAATCCAACAGCGACCCATGCCAACCACACTCTCGCTTTGATTGTGCTAATTCAATATGCCCCCAGACTGTTTGTTATATTTCCTCTGAACCGACGAATTAATAAGACCACCGGATCAATAGCCAAAACTGCGTGGGCTGGTGCAGCTTACAATCTGCTTCTCTATTTGCTGGCTAGCCATATTATAGGAGCTGCGTGGTATGTGGCATCCATTCAGCGGCAGGATGAGTGCTGGAAGATAGAATGTAGGAAGGAGATGAATACCACGCATTCTCCTTCTTGTAAGCCTTTTTTTCTGGACTGTGATAGTTTGAATGAGCCAGAACGAAAAGCGTGGCTAAGAATTACTCATGTTCTTACAAAATGTGATGCCCTAAATGACGACAAGAATTTTCAGTTTGGGATGTTTGCTGATGCCTTCACTGCCGAAGTTGCTTCAACAAACTTCATCGAGAAGTACTTCTACTGCCTTTGGTTTGGTCTTAAGAGTTTGAGTTCATATGGGCAAAATTTAGCGACCAGCACTTCTAGTGGTGAAATTTTATTTAGCATTCTGATTTGCTCAATGGGGTTGGTTCTGTTCTCACACCTCATAGGTCAAGTGCAGGGCTATCTGCAATCCACATCTGCAAGACTTGAAGAGTGGAGAGTAAAACGAAGAGACACAGAGGAATGGATGAGGCATCGACAGCTACCCATTCACTTGCAAGACCGAGTTCGTCGATTCGTTCAATATAAATGGATTGCAACTCGAGGTGTCGACGAAGAGTCGATCTTGCGCTCTTTACCTTTGGATCTTCGACGTCAAATTCAGAGGCATCTTTCTCTCGCACTTGTTCGCCGTGTTCCTTTTTTTGCACAAATGGATGCTCAGCTTTTGGATGCCATATGCGAGCGTCTTGTTCAATCCTTGAATACTAAAGACACATTCATAACCAGAGAGGGAGATCCAGTAAATGAAATGCTTTTCATCATCAGAGGCCAACTAGAGAGCTCCACCACCAATGGTGGCAGGTCAGGATTCTTCAACTCCATCACCCTCAGACCTGGCGACTTCTGCGGTGAAGAGCTACTAACATGGGCCTTAGTCCCATCCCCCAGCATAAGCCTTCCCTCCTCAACTCGAACCGTGAAGTCGCTCACTGAAGTCGAGGCATTCGCACTTCGAGCCGAAGATCTCAAGTTTGTAGCCAGCCAGTTCAAGCGCCTCCACAGCAAGAAACTCCAGCATGCTTTCAGATACTATTCCCACCAGTGGAGGACATGGGGATCTTGCTTCATACAAGCTGCTTGGAGAAGGTATGTGAAAAGAAAGCTAGCTATGGAGTTAGCAAGACAAGAGGAGCTGTATTACGCAACAATGATGGACCAAGAATACAGCCATGGCAGTGAAATGGAAGGTGAAGAAGGAGGTGGCGGTGGTGGTGGTGGTGAAACCAGTGGCACCAAAAATACCACTAAAAAGAAATCCCCACATCTTGGAATAACAATGTTGGCTTCAAAGTTTGCAGCAAATACAAGAAGAGGGCTTCACCAGAAGTCGTTGGCACTCGTCTCAGATGTCAGCAGCTTGAAAATGCCTAAGCTGTTTAAGCCTGAGGAACCAGATTTCTCTGCTTTCCGAGATCATAGTTGA 2097 46.21 MHNIAYSRLGDLQKSFSLYRKVPWWDHILEPDSDFVFRWHRIFLVTCLIALFVDPLYFYLPFIGAPGCMQFNLGLGIVVTFFRTIVDLFSMFHMLMKFRTAFVAPNSRVFGRGDLVKDPTAIAMRYLKKDFVIDLAATLPLPQIVIWFVLPALKNPTATHANHTLALIVLIQYAPRLFVIFPLNRRINKTTGSIAKTAWAGAAYNLLLYLLASHIIGAAWYVASIQRQDECWKIECRKEMNTTHSPSCKPFFLDCDSLNEPERKAWLRITHVLTKCDALNDDKNFQFGMFADAFTAEVASTNFIEKYFYCLWFGLKSLSSYGQNLATSTSSGEILFSILICSMGLVLFSHLIGQVQGYLQSTSARLEEWRVKRRDTEEWMRHRQLPIHLQDRVRRFVQYKWIATRGVDEESILRSLPLDLRRQIQRHLSLALVRRVPFFAQMDAQLLDAICERLVQSLNTKDTFITREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPSPSISLPSSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRKLAMELARQEELYYATMMDQEYSHGSEMEGEEGGGGGGGGETSGTKNTTKKKSPHLGITMLASKFAANTRRGLHQKSLALVSDVSSLKMPKLFKPEEPDFSAFRDHS 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 641446 645307 - CmoCh10G001390.1 Cmo10g00139 389485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00139 698 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 1 694 - -
Cmo10g00139 698 Gene3D Jelly Rolls 436 556 IPR014710 -
Cmo10g00139 698 SUPERFAMILY cAMP-binding domain-like 367 563 IPR018490 -
Cmo10g00139 698 Gene3D - 41 359 - -
Cmo10g00139 698 ProSiteProfiles cAMP/cGMP binding motif profile. 438 568 IPR000595 -
Cmo10g00139 698 CDD CAP_ED 438 569 IPR000595 -
Cmo10g00139 698 MobiDBLite consensus disorder prediction 615 644 - -
Cmo10g00139 698 Pfam Ion transport protein 39 365 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo10g00139 698 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 694 - -
Cmo10g00139 698 Pfam Cyclic nucleotide-binding domain 461 549 IPR000595 -
Cmo10g00139 698 Gene3D Helix hairpin bin 360 428 - -
Cmo10g00139 698 SUPERFAMILY Voltage-gated potassium channels 31 360 - -
Cmo10g00139 698 SMART cnmp_10 438 569 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00139 Cmo-Chr10:641446 Cmo11g00422 Cmo-Chr11:2075897 0 dispersed
Cmo10g00139 Cmo-Chr10:641446 Cmo11g00106 Cmo-Chr11:553085 1.23E-24 wgd
Cmo10g00139 Cmo-Chr10:641446 Cmo14g00651 Cmo-Chr14:3272989 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00139 K05391 - csv:101209760 1196.03