Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00140 ATGGCGATGGAAGCAAATGGGGTTGTTTCTTTTGCTGATAAACTGTTGTTTAAGCAGCAAAAGGAGGAAGCTTTCAACAATGGCGGCTCTCATCTTCATCTTGCAGTTGCAGAAAAGGTTGAAGATGACTCCATTAACGGTGTACCTCTCGACCATCCAAGCATTCCTGGTTGGTTTTCTGAGCACTGCCCTCAATGGCCAGGACAAGCACACTTCTTAAAAGTGGACAAGGTTTTGTTTCAAGGCAAATCTGATTACCAATCCATGTTGGTTTTTCAGTCAGCAGCATATGGAAAGGTGTTTGTGTTGGATGGAGCACTCCAACTCACCGAGAAAGATGAATGTGCTTACCAAGAAATGATTACCCATCTTCCTCTTTGTTCTATTCCAAACCCCAAAAAGGTTTTGGTGATTGGGGGAGGAGATGGTGGCATCCTAAGAGAAATTTCTAGGCATTCCTCCATTGACCAAATCGATATCTGTGAAATTGACACCATGCTCATCGACGTGTACAAGAAATTTTTTCCAGAAATTGCAGTTGGGTATAAAGATTCTCGAGTGAATGTTCATATAATAGATGGAATTGCATTTTTGAATTCCGTTGCACCAGGAACCTACGATGCAATCATAGTGGACGCGTTCGATCCAATAAAGCCCGATGACGAGGTGGTGAGAAGTAGGTTGTTTGAGATGGTGGCAAGAGCACTAAGGGCAGGAGGAGTGCTTTGTATTCAAGCAGAAAGCCTTTGGTTTCATTGTCTTGACATTCAAAATTTGATCTCAAAATGCCACCAAGTCTTCAAAGGCTCAGTTCAATATGCTTGGACCATTGTCCCTGCTTATCCCAGTGGGGTAATCGGTTTCTTGCTGTGTTCGACTCAAGGACCCAAAGTTGACTTCAAAAACCCGATCAATCCCATCGACTCAAATGGGAATTTTGGAGTTGCTACCAAACCCCTGAAGTTTTACAACTCGGAGATTCACTCGGCTGCATTTTGCTTGCCATCGTTCGCAAAGAAAGGGAAGGGGTTGGATCCAAATTTAAATAGAGAAGAAATTAAATCTTGTGAGGAGCGTGTGAAGAAGTTGCTTGAGGTGACACCGCCAAGAGGGAAAGAATTTCTTCAGAAGATTGAGCATATATTAGAACGTGAAAATAATTGGGTGTGGTGGAAACGTGATGGCTGCCCTCCTTTTGAAAAGCAACCAATTGAAAAGAAAACCACCCATGATGCAACTAAAAAACGATTCAATCCATTCCCTTTCTCTCCTCCACCTACCCACACCCTTTTCCCCGTTCTTCATTGCTTCTCTTCTTCTCCATCGTCTGCGGAACCATCAATCCAGAGGTGTTGTTTTCATTCCCTTCAGGTTCTTGGTAGGTAA 1386 43.22 MAMEANGVVSFADKLLFKQQKEEAFNNGGSHLHLAVAEKVEDDSINGVPLDHPSIPGWFSEHCPQWPGQAHFLKVDKVLFQGKSDYQSMLVFQSAAYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGILREISRHSSIDQIDICEIDTMLIDVYKKFFPEIAVGYKDSRVNVHIIDGIAFLNSVAPGTYDAIIVDAFDPIKPDDEVVRSRLFEMVARALRAGGVLCIQAESLWFHCLDIQNLISKCHQVFKGSVQYAWTIVPAYPSGVIGFLLCSTQGPKVDFKNPINPIDSNGNFGVATKPLKFYNSEIHSAAFCLPSFAKKGKGLDPNLNREEIKSCEERVKKLLEVTPPRGKEFLQKIEHILERENNWVWWKRDGCPPFEKQPIEKKTTHDATKKRFNPFPFSPPPTHTLFPVLHCFSSSPSSAEPSIQRCCFHSLQVLGR 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 648065 656281 + CmoCh10G001400.1 Cmo10g00140 389486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00140 461 Pfam THO complex subunit 1 transcription elongation factor 350 417 IPR021861 -
Cmo10g00140 461 TIGRFAM speE: spermidine synthase 58 337 IPR001045 GO:0003824
Cmo10g00140 461 PANTHER SPERMIDINE/SPERMINE SYNTHASE 54 341 IPR001045 GO:0003824
Cmo10g00140 461 Gene3D Spermidine synthase, tetramerisation domain 49 110 IPR037163 -
Cmo10g00140 461 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 56 293 IPR030374 -
Cmo10g00140 461 CDD AdoMet_MTases 134 245 - -
Cmo10g00140 461 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 135 148 IPR030373 -
Cmo10g00140 461 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 56 340 IPR029063 -
Cmo10g00140 461 Pfam Spermidine synthase tetramerisation domain 57 111 IPR035246 -
Cmo10g00140 461 Pfam Spermine/spermidine synthase domain 114 302 - -
Cmo10g00140 461 Gene3D Vaccinia Virus protein VP39 111 342 IPR029063 -
Cmo10g00140 461 PANTHER SPERMIDINE SYNTHASE 54 341 - -
Cmo10g00140 461 Hamap Polyamine aminopropyltransferase [speE]. 57 343 IPR001045 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00140 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101210007 577.015
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00140 Cmo13g00925 CCT
Cmo10g00140 Cmo13g00925 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01804 Cmo-Chr4:9088749 Cmo10g00140 Cmo-Chr10:648065 2.73E-152 dispersed
Cmo10g00140 Cmo-Chr10:648065 Cmo18g00810 Cmo-Chr18:9533908 5.66E-127 dispersed
Cmo18g00851 Cmo-Chr18:9831752 Cmo10g00140 Cmo-Chr10:648065 2.51E-38 transposed
Cmo10g00140 Cmo-Chr10:648065 Cmo13g00925 Cmo-Chr13:8161792 1.78E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g719 . . Bda06g00587 . Bpe12g00587 . . . Cmo13g00925 . Cma10g00133 . Car10g00126 . . Cpe20g00230 . Bhi02g00426 . . . . . . Cla06g01652 Cam06g1836 Cec06g1887 Cco06g1892 Clacu06g1796 Cmu06g1738 Cre06g2556 Cone2ag0896 . . . Lsi02g00359 Csa01g00837 Chy12g01282 Cme12g01707 Blo13g00052 Blo15g00274 . . Bpe07g00828 . . Bma08g00171 Sed08g2494 Cmo10g00140 . Cma13g00898 . Car13g00738 . . Cpe18g00837 Bhi08g01589 Tan05g2027 Cmetu12g1070 Lac10g0432 Hepe07g2240 . . Cla01g01286 Cam01g1442 Cec01g1480 Cco01g1447 Clacu01g1353 Cmu01g1257 Cre01g1279 Lsi06g01542 Csa01g00162 Chy02g02568 Cme02g01957
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00140 Cmo_Chr10 FPKM 8.849206 9.600368 2.786933 2.214015 25.909586 27.094173 26.346849 8.014644 8.62343 7.913972