Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00141 | ATGCTGTCAAGTTCTTGCTTGAGTTTGTTAGAGCTATCGTCTTCGGATATGTTGGATTTTCCTCCTACACCAAGAACCGTTCCACGGGTGTTGACTGCTCCCGGGATATTTTCCGATAAGGATTCGGAAGTTTCCTCGTCGAAAGGCCAGGGGAGAAAAATAATAGTGGCAAATTTTCTTCCTCTTCATGCTAAGAAGGATACAGATTCCGGGCAATGGAACTTCAGTTTTGACGAGGATTCGCTTCTGCTTCAGCTGAAGGATGGATTCTCACCTGATGTTGATGTTATATATGTCGGATCTTTAAAGGTTGATGTTGATGTCCGGGAGCAAGACGAGATTTCTCAGAAACTACTGGAGGACTTTAACTGCGCACCGACTTTCATTCCTACGCACCTTCAGAAACAGTTCTATCATGGATTCTGTAAGCAACATTTGTGGCCACTTTTTCATTACATGATGCCAATTTCCCCTTACCATGGATCCCGCTTTGATCGACGTCTTTGGCAAGCGTATCTTTCGGCTAACAAAAGGTTTGCTGATAAAGTTATGGAGGTAATCAATCTAGAAAAAGATTATGTCTGGATTCATGACTACCACCTTATGGTTCTCCCTACTTTTTTGAGGAAACGCTACAGTCGAATCAAGCTCGGATTCTTCCTTCATAGTCCGTTTCCTTCATCGGAAATATACCGAACTCTTCCTGTTAGAGATGAGATTCTGAGAGCATTACTTAATGCAGACCTAATAGGTTTCCATACATTTGATTACGCTCGCCACTTCCTATCTTGTTGTAGTAGGCTGCTTGGTTTGGAGTATGAATCTAAACGAGGGTATCTCACGCTCGAGTATTTTGGCCGTACAATATACATCAAGATTTTGCCTGTTGGGGTTCATATGGGTCGACTTGAATTTGCATTAGACCAACCACAGACTTCAATCAAGGTCAAGGAAATCAAAGAAAATCTCCAAGGAAAGAAACTTATTCTTGGTGTTGATGACATAGACATATTTAAAGGTATAGGTCTGAAGTTACTAGCTATGGAACAGCTCTTGAGCCAGCATCCAGAGTTACGGGGCAATGTCGTTCTGGTGCAAATTCTAAATCCAGCACGGAGCAATGGGAATGATGTACAAGAAGCAAAAAGGGAAACTTATGAGATAACCGAAAGGATTAACAAGGTTTTTGGTTGTCCGGGCTATCAACCTGTAATCTTGATTGATCATCCTATTCCTCCTCACGAGAAGATTGCATATTACGTATCAGCGGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCATATGAGTACATTGTTTGTCGACAGGGAACCTCAAAAATGGATAAAGTCTTGGAAGTCTCCCCCAGTTCGCCTCGTACCAGCACGATTGTCGTGTCGGAATTTATAGGTTGTTCACCGTCCCTAAGTGGTGCGGTCAGGGTAAACCCCTGGGATTTTGACGCTGTAGCTGATGCACTTTATGCAGCTGTCACCATGCCTGCTTTAGAGAAGCAACTGAGGCACGAAAAGCATTACAGATACGTTAACTCTCACGATGTTGCTTACTGGGCTCGCAGTTTCTTGCATGATTTGGAGCGAGCATGCCAAGAACACTACAGTAAACGTTGCTGGGGCATTGGTTTAGGTTTAAGTTTCAGAATTTTGTCACTTTCTCCAAGTTTCAGGAAGCTTTCCATTGAACATATTGGCTCTGCATACCGAAATGCTTCTAGGAGAGCGATATTTTTGGATTATGATGGGACTGTGGTTTCCGAAACTTTGGTGGTCAAATCCCCATCACCTGAAGTCATTTCTATCATCAACAACCTTTGCACGGATCCAAAGAACACCGTGTTTATTGTTAGTGGCAGGGGGAAAGTTTCCCTCGGTTCATGGTTCGATTCGTGTAAGAATCTAGGTATTGCCGCTGAACATGGGTACTACTTGAGGTGGAATAGGGACTCTGATTGGGAAGTTAGTCCATTAGCTGAAAACTTCGACTGGAAAAGGATTGCAGAACCTGTGATGAACTTATACACTGAGGCAACCGATGGTTCATACATAGAGACCAAGGATAGTGCCTTGGTATGGCACTATCAAGACGCGGATCCTTATTTTGGTTCGTGTCAGGCCATGGAGCTCTTGGACCACCTTGAAAACGTCCTTGCTAACGAACCCGTAGTCGTCAAAAGAGGCCAGCAGATCGTCGAAGTAAAACCACAGGTACTTACTGCTTCGGCTCACCTTTTCCTTGTCATCTCGTGGAGGCTGAGCAATTGTCGTCATCACTGCTACTGTGTCATTGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACAATGGTCAATTCTGATAAAGCACCCGACTTTGTGATGTGCATTGGAGACGATCGATCCGATGAAGATATGTTCGAGAGCATATTGAGTAGAAGCTATAGCTTATCCCTTGCTACGCCCCCGATGATATTTGCCTGTACTGTGGGACAAAAGCCTAGCAAAGCCAAATACTATTTAGACGATACCGCAGATGTTTTGACCTTGCTTCAAAGCCTGGCCAACTGTTCTAGTAGCCGTAAACTGAGATCGAGTTTTGAAACTCCTGTTTTGTTCGAGGATGATGTTTGA | 2646 | 43.69 | MLSSSCLSLLELSSSDMLDFPPTPRTVPRVLTAPGIFSDKDSEVSSSKGQGRKIIVANFLPLHAKKDTDSGQWNFSFDEDSLLLQLKDGFSPDVDVIYVGSLKVDVDVREQDEISQKLLEDFNCAPTFIPTHLQKQFYHGFCKQHLWPLFHYMMPISPYHGSRFDRRLWQAYLSANKRFADKVMEVINLEKDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSPFPSSEIYRTLPVRDEILRALLNADLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHMGRLEFALDQPQTSIKVKEIKENLQGKKLILGVDDIDIFKGIGLKLLAMEQLLSQHPELRGNVVLVQILNPARSNGNDVQEAKRETYEITERINKVFGCPGYQPVILIDHPIPPHEKIAYYVSAECCIVNALRDGMNLVPYEYIVCRQGTSKMDKVLEVSPSSPRTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYAAVTMPALEKQLRHEKHYRYVNSHDVAYWARSFLHDLERACQEHYSKRCWGIGLGLSFRILSLSPSFRKLSIEHIGSAYRNASRRAIFLDYDGTVVSETLVVKSPSPEVISIINNLCTDPKNTVFIVSGRGKVSLGSWFDSCKNLGIAAEHGYYLRWNRDSDWEVSPLAENFDWKRIAEPVMNLYTEATDGSYIETKDSALVWHYQDADPYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQVLTASAHLFLVISWRLSNCRHHCYCVIGVTKGLVAERVLSTMVNSDKAPDFVMCIGDDRSDEDMFESILSRSYSLSLATPPMIFACTVGQKPSKAKYYLDDTADVLTLLQSLANCSSSRKLRSSFETPVLFEDDV | 881 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 656364 | 659122 | + | CmoCh10G001410.1 | Cmo10g00141 | 389487 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00141 | 881 | SUPERFAMILY | HAD-like | 584 | 859 | IPR036412 | - | |
Cmo10g00141 | 881 | CDD | GT20_TPS | 52 | 537 | IPR001830 | GO:0003824|GO:0005992 | |
Cmo10g00141 | 881 | Gene3D | Glycogen Phosphorylase B; | 305 | 522 | - | - | |
Cmo10g00141 | 881 | TIGRFAM | T6PP: trehalose-phosphatase | 581 | 859 | IPR003337 | GO:0003824|GO:0005992 | |
Cmo10g00141 | 881 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 1 | 752 | IPR001830 | GO:0003824|GO:0005992 | |
Cmo10g00141 | 881 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 773 | 869 | IPR001830 | GO:0003824|GO:0005992 | |
Cmo10g00141 | 881 | TIGRFAM | HAD-SF-IIB: HAD hydrolase, family IIB | 585 | 812 | IPR006379 | - | |
Cmo10g00141 | 881 | Pfam | Glycosyltransferase family 20 | 52 | 537 | IPR001830 | GO:0003824|GO:0005992 | |
Cmo10g00141 | 881 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 52 | 541 | - | - | |
Cmo10g00141 | 881 | CDD | HAD_TPP | 585 | 851 | - | - | |
Cmo10g00141 | 881 | Gene3D | Glycogen Phosphorylase B; | 44 | 304 | - | - | |
Cmo10g00141 | 881 | Pfam | Trehalose-phosphatase | 587 | 774 | IPR003337 | GO:0003824|GO:0005992 | |
Cmo10g00141 | 881 | PANTHER | ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED | 1 | 752 | - | - | |
Cmo10g00141 | 881 | PANTHER | ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED | 773 | 869 | - | - | |
Cmo10g00141 | 881 | Gene3D | - | 583 | 694 | IPR023214 | - | |
Cmo10g00141 | 881 | Gene3D | - | 696 | 871 | IPR023214 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00141 | Cmo11g00107 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00141 | Cmo-Chr10:656364 | Cmo06g00655 | Cmo-Chr6:3295418 | 0 | dispersed | |
Cmo04g00298 | Cmo-Chr4:1483665 | Cmo10g00141 | Cmo-Chr10:656364 | 0 | transposed | |
Cmo04g01800 | Cmo-Chr4:9063736 | Cmo10g00141 | Cmo-Chr10:656364 | 0 | transposed | |
Cmo10g00141 | Cmo-Chr10:656364 | Cmo11g00107 | Cmo-Chr11:557057 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00141 | K16055 | - | csv:101209676 | 1560.04 |