Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00141 ATGCTGTCAAGTTCTTGCTTGAGTTTGTTAGAGCTATCGTCTTCGGATATGTTGGATTTTCCTCCTACACCAAGAACCGTTCCACGGGTGTTGACTGCTCCCGGGATATTTTCCGATAAGGATTCGGAAGTTTCCTCGTCGAAAGGCCAGGGGAGAAAAATAATAGTGGCAAATTTTCTTCCTCTTCATGCTAAGAAGGATACAGATTCCGGGCAATGGAACTTCAGTTTTGACGAGGATTCGCTTCTGCTTCAGCTGAAGGATGGATTCTCACCTGATGTTGATGTTATATATGTCGGATCTTTAAAGGTTGATGTTGATGTCCGGGAGCAAGACGAGATTTCTCAGAAACTACTGGAGGACTTTAACTGCGCACCGACTTTCATTCCTACGCACCTTCAGAAACAGTTCTATCATGGATTCTGTAAGCAACATTTGTGGCCACTTTTTCATTACATGATGCCAATTTCCCCTTACCATGGATCCCGCTTTGATCGACGTCTTTGGCAAGCGTATCTTTCGGCTAACAAAAGGTTTGCTGATAAAGTTATGGAGGTAATCAATCTAGAAAAAGATTATGTCTGGATTCATGACTACCACCTTATGGTTCTCCCTACTTTTTTGAGGAAACGCTACAGTCGAATCAAGCTCGGATTCTTCCTTCATAGTCCGTTTCCTTCATCGGAAATATACCGAACTCTTCCTGTTAGAGATGAGATTCTGAGAGCATTACTTAATGCAGACCTAATAGGTTTCCATACATTTGATTACGCTCGCCACTTCCTATCTTGTTGTAGTAGGCTGCTTGGTTTGGAGTATGAATCTAAACGAGGGTATCTCACGCTCGAGTATTTTGGCCGTACAATATACATCAAGATTTTGCCTGTTGGGGTTCATATGGGTCGACTTGAATTTGCATTAGACCAACCACAGACTTCAATCAAGGTCAAGGAAATCAAAGAAAATCTCCAAGGAAAGAAACTTATTCTTGGTGTTGATGACATAGACATATTTAAAGGTATAGGTCTGAAGTTACTAGCTATGGAACAGCTCTTGAGCCAGCATCCAGAGTTACGGGGCAATGTCGTTCTGGTGCAAATTCTAAATCCAGCACGGAGCAATGGGAATGATGTACAAGAAGCAAAAAGGGAAACTTATGAGATAACCGAAAGGATTAACAAGGTTTTTGGTTGTCCGGGCTATCAACCTGTAATCTTGATTGATCATCCTATTCCTCCTCACGAGAAGATTGCATATTACGTATCAGCGGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCATATGAGTACATTGTTTGTCGACAGGGAACCTCAAAAATGGATAAAGTCTTGGAAGTCTCCCCCAGTTCGCCTCGTACCAGCACGATTGTCGTGTCGGAATTTATAGGTTGTTCACCGTCCCTAAGTGGTGCGGTCAGGGTAAACCCCTGGGATTTTGACGCTGTAGCTGATGCACTTTATGCAGCTGTCACCATGCCTGCTTTAGAGAAGCAACTGAGGCACGAAAAGCATTACAGATACGTTAACTCTCACGATGTTGCTTACTGGGCTCGCAGTTTCTTGCATGATTTGGAGCGAGCATGCCAAGAACACTACAGTAAACGTTGCTGGGGCATTGGTTTAGGTTTAAGTTTCAGAATTTTGTCACTTTCTCCAAGTTTCAGGAAGCTTTCCATTGAACATATTGGCTCTGCATACCGAAATGCTTCTAGGAGAGCGATATTTTTGGATTATGATGGGACTGTGGTTTCCGAAACTTTGGTGGTCAAATCCCCATCACCTGAAGTCATTTCTATCATCAACAACCTTTGCACGGATCCAAAGAACACCGTGTTTATTGTTAGTGGCAGGGGGAAAGTTTCCCTCGGTTCATGGTTCGATTCGTGTAAGAATCTAGGTATTGCCGCTGAACATGGGTACTACTTGAGGTGGAATAGGGACTCTGATTGGGAAGTTAGTCCATTAGCTGAAAACTTCGACTGGAAAAGGATTGCAGAACCTGTGATGAACTTATACACTGAGGCAACCGATGGTTCATACATAGAGACCAAGGATAGTGCCTTGGTATGGCACTATCAAGACGCGGATCCTTATTTTGGTTCGTGTCAGGCCATGGAGCTCTTGGACCACCTTGAAAACGTCCTTGCTAACGAACCCGTAGTCGTCAAAAGAGGCCAGCAGATCGTCGAAGTAAAACCACAGGTACTTACTGCTTCGGCTCACCTTTTCCTTGTCATCTCGTGGAGGCTGAGCAATTGTCGTCATCACTGCTACTGTGTCATTGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACAATGGTCAATTCTGATAAAGCACCCGACTTTGTGATGTGCATTGGAGACGATCGATCCGATGAAGATATGTTCGAGAGCATATTGAGTAGAAGCTATAGCTTATCCCTTGCTACGCCCCCGATGATATTTGCCTGTACTGTGGGACAAAAGCCTAGCAAAGCCAAATACTATTTAGACGATACCGCAGATGTTTTGACCTTGCTTCAAAGCCTGGCCAACTGTTCTAGTAGCCGTAAACTGAGATCGAGTTTTGAAACTCCTGTTTTGTTCGAGGATGATGTTTGA 2646 43.69 MLSSSCLSLLELSSSDMLDFPPTPRTVPRVLTAPGIFSDKDSEVSSSKGQGRKIIVANFLPLHAKKDTDSGQWNFSFDEDSLLLQLKDGFSPDVDVIYVGSLKVDVDVREQDEISQKLLEDFNCAPTFIPTHLQKQFYHGFCKQHLWPLFHYMMPISPYHGSRFDRRLWQAYLSANKRFADKVMEVINLEKDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSPFPSSEIYRTLPVRDEILRALLNADLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHMGRLEFALDQPQTSIKVKEIKENLQGKKLILGVDDIDIFKGIGLKLLAMEQLLSQHPELRGNVVLVQILNPARSNGNDVQEAKRETYEITERINKVFGCPGYQPVILIDHPIPPHEKIAYYVSAECCIVNALRDGMNLVPYEYIVCRQGTSKMDKVLEVSPSSPRTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYAAVTMPALEKQLRHEKHYRYVNSHDVAYWARSFLHDLERACQEHYSKRCWGIGLGLSFRILSLSPSFRKLSIEHIGSAYRNASRRAIFLDYDGTVVSETLVVKSPSPEVISIINNLCTDPKNTVFIVSGRGKVSLGSWFDSCKNLGIAAEHGYYLRWNRDSDWEVSPLAENFDWKRIAEPVMNLYTEATDGSYIETKDSALVWHYQDADPYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQVLTASAHLFLVISWRLSNCRHHCYCVIGVTKGLVAERVLSTMVNSDKAPDFVMCIGDDRSDEDMFESILSRSYSLSLATPPMIFACTVGQKPSKAKYYLDDTADVLTLLQSLANCSSSRKLRSSFETPVLFEDDV 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 656364 659122 + CmoCh10G001410.1 Cmo10g00141 389487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00141 881 SUPERFAMILY HAD-like 584 859 IPR036412 -
Cmo10g00141 881 CDD GT20_TPS 52 537 IPR001830 GO:0003824|GO:0005992
Cmo10g00141 881 Gene3D Glycogen Phosphorylase B; 305 522 - -
Cmo10g00141 881 TIGRFAM T6PP: trehalose-phosphatase 581 859 IPR003337 GO:0003824|GO:0005992
Cmo10g00141 881 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 752 IPR001830 GO:0003824|GO:0005992
Cmo10g00141 881 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 773 869 IPR001830 GO:0003824|GO:0005992
Cmo10g00141 881 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 585 812 IPR006379 -
Cmo10g00141 881 Pfam Glycosyltransferase family 20 52 537 IPR001830 GO:0003824|GO:0005992
Cmo10g00141 881 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 52 541 - -
Cmo10g00141 881 CDD HAD_TPP 585 851 - -
Cmo10g00141 881 Gene3D Glycogen Phosphorylase B; 44 304 - -
Cmo10g00141 881 Pfam Trehalose-phosphatase 587 774 IPR003337 GO:0003824|GO:0005992
Cmo10g00141 881 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 752 - -
Cmo10g00141 881 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 773 869 - -
Cmo10g00141 881 Gene3D - 583 694 IPR023214 -
Cmo10g00141 881 Gene3D - 696 871 IPR023214 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00141 Cmo11g00107 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00141 Cmo-Chr10:656364 Cmo06g00655 Cmo-Chr6:3295418 0 dispersed
Cmo04g00298 Cmo-Chr4:1483665 Cmo10g00141 Cmo-Chr10:656364 0 transposed
Cmo04g01800 Cmo-Chr4:9063736 Cmo10g00141 Cmo-Chr10:656364 0 transposed
Cmo10g00141 Cmo-Chr10:656364 Cmo11g00107 Cmo-Chr11:557057 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00141 K16055 - csv:101209676 1560.04