Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00144 ATGGGTCAGCCGGAGAGATCCACCTTAAGGGTCTCAAACGTTCCCGAATCCGCCGTAGCCGAAGACCTCTTGACCTTTCTCAAGTCCAAATTGGGTCCCGACTCCGTCTTCGCCATCGAAATCTTCACCGAGCGAAAGAACTGGAAATCGCGCGGCTCTGGTCGCGTACAGTTCACCACGCTCGAGGCCAAATCCAAAGCCCAGTCCCTCTCCGTTCAAAACAACCTCGTCTTCAGCACCCACAACCTGAGATTCTCCGAGACCAACGATGACATTATTGTGAGGCCAATACACGGCAGAAACAGGACCGAGAACGGGGTTTTGCATGTGGGTTTTATGCTGAAAGAGGATCACATGAGTGTTTTGGAGTCTTGGGAAGGTGTAAAAGCTTGGATTATGCCGGAGAGGAGGAGGGTGGAGTTCTGGATATGGCGCGAAGACGAGTGCTATAAGCTTGAAGTGATGTTCGAGGAAATTCTCGAAACTACTGGATATTGTTTAGGAGATGAGAAATTGAACGCACTTCTCCTGAAGCTCAAATATGCGCCGAGAATATATAAAAAGATTTCTGGATCAAACATGGCTTACAAATTCAGCAGCAGTCGCTACCGTCTATGCAAAGAAGAACATGATTATCTTTGGATTCGGACAACAGAGTTTTCTTCTCTGAGATCAATAGGTCAGTCCACTTCCTTTTGTTGGGAAGTTGAAGAAGATTTGCAGGCTTCAGATATGTTTTCTAGTTTCCCACTTTACAGGGAAACTCCAAAAGATATTACATTAGAGGATGGTGGAGAATTTGGCTCTACCTCGGAGGCTGTTCCTCTGATAAAATCTGGGTTAGTTTCTAATCTAGCTTATGAGGTTCAATATCAGCTCAATTCCTTAGTTCATATGCAGAAAATTAGCCTTGCTGCAGCCAGCAATGATCTGATTGATTTCCTTAGCACTTTAGGTACTGACACTGCGTTGAATATACTTCAGAGGTTACATCAGCTGAAGTTCATATGTTATGATCCCTTGTCGTTCCTAAAGACCCAATTACATGTTCTGAAAAGGAACTGCAAAGTTCTTCCTTCATTGTCTCAAAAGAGGTTGTCGAATAATGTGATGAACTGCTACAGAGTTCTTGTCACCCCATCAAGAATTTATTGTTTGGGACCTGAGCTTGAAACTTCTAATTATGTTGTGAAAAACTTTGCATCATATGCTTCTGATTTTATGAGGGTTACTTTTGTTGAAGAGGACTGGAGTAAGCTTCCTGCAGGTGCCGTTACCACGAGTATACAGCGTGGCCTACTCTCGAAACCTTATAGAACTGAAATCTATCACCGAATAGTTAGTATTCTTCGAAATGGAATTGTTATTGGAGCCAAAAGGTTTGAGTTCTTGGCCTTCTCAGCTAGTCAACTCCGATCGAACTCTGTTTGGATGTTTGCTTCGAGCAACAACTTGAAAGCAGAAGAAATTAGACAGTGGATGGGCTGCTTTGAAAAGATTCGTAGCATCTCCAAATGTGCAGCTAGGATGGGTCAATTGTTCAGTTCTTCCACTCAAACTCTTGTTGTTCCTACTCAAGATGTTGAGATTATACCCGATATCGAAGTGAATTCTGATGGTATTGACTACTGCTTCTCAGATGGTATCGGAAAAATTTCGCTTTCATTTGCAAGGCAAGTAGCTGATAAGTGTGGATTGACTCACATCCCTTCGGCATTTCAAATTCGATATGGTGGATACAAAGGTGTCATTGCTGTCGATCGTAATTCCTTTCGTAAACTATCTTTGCGTGATAGCATGCTTAAATTCGAATCGAAGAACAAGATGCTCAATGTTACCAAGTGCAGCGACTCCATGCCTTGCTATCTAAATCGAGAGATCGTTACTCTTTTGTCAACTTTGGGAGTGAAGGACGAAAGCTTCGAGGCACTGCAGCAAGAACAACTACATCTTCTAAGGAGAATGCTGACGGATAAAGTCGCTGCGTTGAACGTCTTGGAAAATCTGAACGGTGCTGATTCTAATAACATTCTGGTGCAGATGTTAAACCACGGGTACGAGCCTAATATTGAACCGTACCTCTCAATGATGCTTCAAGCACACTATTGGAACCTGTTTTCTGATTTAAGAAGTAGATGTAGAATATTTGTTCCAAAGGGCCGGATCCTCCTAGGCTGCTTGGATGAAACTGGTATATTAAACTATGGCCAAGTTTATGCCTGCATAACCTTGACAAAATCCGAGCTTCGGGACAGGAACCAGAACTACTTCCATAAGATAGACGAGACGAAATCCATATTGCTCGGGAAGGTTGTTGTTACAAAAAATCCATGTCTTCATCCAGGAGATGTAAGGGTTCTTGAAGCTATTTTCCATGTAGAACTAGAGGAGAAGGGATTGGTGGACTGTCTTATATTTCCTCAGAAAGGAGAAAGGCCACATACAAATGAATGTTCTGGTGGTGATCTTGATGGAGATTTATATTTCATAAGTTGGGACGAGAATCTGATTCCGCCCAAAACCGAAGCGCCGATGGACTATACGGGACGGAGGCCACGTATAATGGATCACGATGTAACACTAGAGGAAATTCAGAAGTTTTTTGTTGATTATATGATCAATGACACATTAGGTGCCATTTCGACTGCACATTTAGTTCATGCAGACCGTGAACCGAAAAAAGCCCTAAGCTCGAAATGTTTAGAGCTGGCTGCGCTGCACTCCATGGCAGTCGATTATGCAAAAACCGGAGCGCCAGCGGAGATGCCTCGAGTTTTAAAACCTAGGGAGTTTCCAGATTTTATGGAGAGATTTGATAAACCAATGTACAAATCCAATAATGTACTAGGAAAACTCTACAGGGCTGCGGTTAAGACGATGGAGCAAGAAAGGTCAAGACTTGTGTGGACAGAGGAGACTGCTACAGCAATTTATGATCATGATCTTGAAGTGGATGGCTTCGAAGCCTTCCTTGAAACAGCTGAAAGTTTCAAAGTCATGTACATTGAAAAAATGAGCATTTTGATGAACTACTACGGGGCAGAGTATGAAGATGAGATATTGATGGGCGATCTTAGAAGTCGAGCATCGTATCTGCAACGTGACAATCGCAAGTACGGCGATATGAAGGATCGGATCTTGCTTTCAGTTAAGTGTGTACGTAAGGAGGCCAAAGAATGGTTCGAGAATAGCTGCGCCCCACATGAACACAAGATGATGGCTTCTGCATGGTATCATGTAACTTATCACCCTTCTTACTTCAAACAAGATATGTTCTACTTTAGCTTCCCATGGATTGTACATGATGTTTTACTCAACATTAAGGCAATGAACTCCAAAAGACGTGAAGCAGAAAAGAACTTGTAG 3366 42.78 MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMSVLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLKYAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDLQASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQKISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPSLSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKLPAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFASSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKVAALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKCLELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTMEQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHVTYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 662653 666501 - CmoCh10G001440.1 Cmo10g00144 389490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00144 1121 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 90 IPR000504 GO:0003723
Cmo10g00144 1121 SUPERFAMILY RNA-binding domain, RBD 5 123 IPR035979 GO:0003676
Cmo10g00144 1121 PANTHER RNA-DEPENDENT RNA POLYMERASE 5 1115 IPR007855 GO:0003968
Cmo10g00144 1121 Coils Coil 1100 1121 - -
Cmo10g00144 1121 Pfam RNA dependent RNA polymerase 378 955 IPR007855 GO:0003968
Cmo10g00144 1121 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 5 1115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00144 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - csv:101209921 2043.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02226 Cmo-Chr4:16634477 Cmo10g00144 Cmo-Chr10:662653 0 dispersed
Cmo05g00385 Cmo-Chr5:1732535 Cmo10g00144 Cmo-Chr10:662653 1.04E-169 dispersed
Cmo10g00144 Cmo-Chr10:662653 Cmo11g00654 Cmo-Chr11:3134072 3.72E-25 dispersed
Cmo10g00144 Cmo-Chr10:662653 Cmo15g00938 Cmo-Chr15:4798114 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g714 . . Bda06g00585 . . . . Bma12g01030 . . Cma10g00138 . Car10g00129 . Sed08g0142 . . Bhi02g00421 Tan09g2226 Cmetu02g1382 . Hepe09g0188 . . Cla06g01649 Cam06g1834 Cec06g1883 Cco06g1889 Clacu06g1793 Cmu06g1735 Cre06g2553 . . Cone13ag0129 . . . . . . . . . Bpe07g00826 . . . . Cmo10g00144 . . . . . . Cpe18g00835 . . . . . . . . . . . . . . Lsi06g01537 Csa01g00166 Chy02g02565 Cme02g01954
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012365 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00144 Cmo_Chr10 FPKM 2.892308 0.0 2.589481 3.315238 0.0 0.0 0.0 0.0 0.0 0.0