Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00147 ATGTTTTTGACTCGAGTGATTGGGAGAAGATTTCTGGCTGCTGCTAGATCAGAAACTTCCTCTGCCACAGCTGCTGCTTCTACAACTACGATGGGCTACAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAAATGACGACAAACCTGTTGTATATGATTCAGCCACTGCACTGAAAGAAAATACCCTCCTTGTCGTGTATGGAGTTGGAATGCATCTTGATTCATACCGGTTACAGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGATGATCTTAATAAGCTATGGTGCGGAAGTCAATGTGCCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGGTAAACGCCCTGTGATTAGCGAATCAGTATTTCAAAATCAGCACTTGTATGCAGTGGAGCTTATCATCAAGGGACATGATGCCCTGGCAGCGTTATGTATTGATCTAGGGTTTCTCGGTAAGCGGATAGCTTTGAATTGGCTTTCCTCTGTCGAATTAGGGTTAGGATTGATGGTACTCGTTCAGCGTGAAGGTGGGATCGAAACTGGAATTGGGGAAAATGCAAGGCTATGCATGGGCGTCGAGGTGAGGACTGGAAACGGACTCGGCACATGTGGACAGTCCTCACACGTGGGTGGACGTAGGATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCTCAAGATTCCCCACCTTTTATTGGCATAATCCGGTGGTTAACGGTTGGTAAGGAGAATAAGTTAAAGTTAGGTGTGAATTGGCTTTATCGATCTTCTGAACTAAATCTCGGCAAAGGCATCCTTTTGGAAGCTGCGCCGAACGAAGTCTTCTATTCCTTTCATAAGGATGAAATTCCTGCTGCATCTTTACTCCATCCGTGTAAAGTTGCATTTCTCCCAAAGGACGTTAAACTTTCATCAGGGATCTCGTCATTTGTGTGCCGGAGAGTGTATGACATAACAAATAAGTGTTTATGGTGGCTTACCGATCAGGATTATATTAATGAACGTCAGGAAGAAGTAGATCAATTGCTATATAAGACAAGATTAGAAATGCATGCTTCTGTGCAATCCGGTGGCCGATCACCTAAGCCTACAAGTGGTCCAACATCAACATCTCAGTTAAAAGCTAATTCAGATAGTGTTCAAACCACTGCCTTTCCTTCTCACACAAAAGGCAAGAAAAGAGAAAGAAGTGACCAGGGATTAGAATCTGTTAAACGTGAGCGCATCATCAAAGCTGATGAAGGGGATTCTGCTAACTGCAGATTGGAAAATACGTTAAAGTCTGAGATTGCAAAAATTGCTGAAAAAGGAGGCTTAGTTGATTCTGAAGCTGTCGAGAAATTGGTGCAGCTTTTGCTGACTGATAGAAATGACAAAAAAATTGATTGGGCTTGCAGATCAGCACTTGCAGGTGTGATAGCTGCCACAGATAAGGTCGAGTGCCTTAGTCAATTTGTGCATCTTAAGGGTTTACTTGTACTTGATGAATGGCTCCAAGAGGTTCACAGGGGGAAAATTGGCAGTGGTGGTAGCCCCAAGGATAGCGATAAATCAGTTGAGGAATTTCTCCTGGTTTTGCTTCGAGCCCTTGATAAACTTCCTGTAAATCTTCCTGCTTTACAGATGTGCAATATTGGGAAGTCTGTGAATCATTTACGCTCACATAAGAATTTAGAAATTCAGAAGAAAGCAAGGAGCTTAGTGGACACATGGAAAAAACGCGTTGAAGTGGAAATGAACATTAATGATGCAAAGTCTGGTTCAAACCAAGCTGTTGCATGGAGTGCAAGGACTCGTCCATCTGAAGTTTCTCATGGAGGGAGGAATCAAGATGCATCCTCTGAAGTTGCCATGAAGAGCTCGGTTTCTCAGCTCACTACATCCAAATCTGTTTCAGTTAAGCTAGCTCAGGATGAGAGTGTTACAAGATCTGCATCTGCCTCTCCTGGTTCGATAAAACCTGTTTTATCACCTGCATCAGCAAGCATTAACTCGAAAGATGGATCTACCAGAAATCCTGGTGTTTGTGGCACTACTGATCTTGCTCAAACTATTGCCAAGGATGAAAAGAGTAGCAGTTCCAGCCAGTCCCACAATAATAGTCAATCTTGTTCTAGTGAACATGGTAAAAGTGGTGGCTTAGGGAAGGAGGATGCAAGAAGCTCTACTGCTGGTTCTATGAGCGTGAACAAGATCTCAGGTGGTGGATCTCGCCAGCGCAAGTCAGTTAATGGATTTCCTGGTTCTGTTCTCTCGGGGGCTCAACGAGATGTAGGATCAGGGAAAAGTTCTTTGCATAGAAACACAGTCTTAGAGAGATCATCACAATCTGGAATGACCTTTGAAAAGGCATGTGATGGACCTATTGTTGAGGGAAACAGTCCTAAATTGATAGTGAAGATCACCAATCGTGGCCGGAGTCCTGCACAGAGTGCTAGTGGAGGATCTTCTGAAGATCCTTCGATAATGAATACCCGGGCTTCTTCTCCTCCACTTTCAGAGAAGCTTGATCAATTTGATCACAGTAAGAGTGATACATGTCAACCTAATATTACTGGAGATGTGAATGCTGAGCCCTGGCAGAATAGTGATGTAAAGGATATGGTGACTGGGGCTGATGATGGTGATGGATCTCCTGCTGCTGTAAATGGTGAAGAGCGATGTAGGACTGCTGAGGATGTTAAAGTTTCAAAGACAAATTCGTCATCATTAGCAAATGATCAAAAGAATGGGAAGTTACATGAGGCTTCTTTTAGCTCTATGAATGCTTTAATTGAGAGTTGTATTAAATGCTCCGAAGCGAGTATGCCTACCTCTCTCACAGATAATGTTGGAATGAATTTACTCGCTAGTGTGGCAGCTGTTGAGATGTCAAAGTCTGATTTTGTTTTGCCTTCCGATACTCAAGGAAATATCACTACAGTTGACCGAAGAGGCAGTGATTGTAAAGTCAAAGCATCTTGTCCTGAAGAGGATTCTAGAGATAACATGCAGTCAAATGATGCTATGGTTGTTAATGAGCAGGGTGTGATCATTGGTTCCTTTGGAGCTAATGGGGATGGAAGTTCTGCTTCACATTCTGAAGAGAAACCTATTGGAGATCTAAATGGTCATTCAAAATCTTCTGGTGTAAATTTGCAACAAACGGCTGTGCCACTGGCAGACGGATGTATAAAAATGGACGAGGCTGGAGGCCCTGCCTCTCCTGCTAGGATACCAGAGAAGGGCTCTGAGATTGATGGGGCTAATCCAGTCAAGGACAGAAAGACATCTGATGTAGTAGATGAGGATAGCAGTCCAGAATCAAGACCAAAGCCAAGCAGTTCTTTTCCTGATGGTGGCATGGTCGTTGATGGTATCTCGAATCGGGAAGTTGAAATGAATGTTGTTGACAAGCCTTTGCATCGGTTCCAAGAAGCTGATGACAATACAGATAATAGAATGAATGGTGTTAGTACAGCAGACCAAAGGCCATCATCAAAGTCGAACAGTGATTCTGCTAAATTAAAGAATGATGAATTATTTCAGGCTTCAGGCTCTTCAAGTGATCTGGTTTCTATAAATGCAAGTGGGATGAAGGGCGAGAAGGATGATGAAACCAACGAATCAGCTGATGTCAAACAACTTGAAAAACATCAAAGTGATCGAGACTCTATGCCTTCTGAGTCCCGAGATTTAGGTGGTTTGTGTTCAGCTATCAACCATGAGGATGAGCATGCAGAGGAGAATTTGGAATGTAACGAGGATAATGAGAAAAGTGGAGTACAAACACATCATGGGCAATCTATTATGTCTCCTGTTCAAGAAACTGAACAGCATCTGCCATCCAAGAGATCCAAATTAGCTGGTGTAGAAGCAGAAGAGGCAGAGGAGTCTACATCTACTGCTGCAGATCCTGGTTCCATGACTGCTGCGGGGGTATCAGATGTGGATGCTAAGTTGGAATTTGATTTGAATGAAGGCTTTAATGTAGATGATGGAAAATGCAGTGAGCCAAGTAGCTTTACAACGTCTGGTTGTTTGACAACTGTTCAGTTAATTAGTCCGTTGCCCCTTCCTGTATCTAATGTGGTAAGCAACATTCCTGCTTCAATTACAGTTGCAGCTGCAGCAAAAAGACCTTTCGTTCCACCTGATGATCTATTGAGGAGCAAAGGGGAACTGGGTTGGAAAGGATCAGCTGCCACAAGTGCTTTTCGACCTGCTGAACCTAGAAAAGTTCTAGAAATGCCACTAGGTGTTGCAACCACTCCACTTGCTGATGCTGTGGCTAATAAAACTTCTCGACCTCCGTTGGATATTGATTTGAATGTGCCTGATGAAAGGATTCTTGAGGATATGAATGGCCAGATGTCTACTCAGGATGTGGCCTCTAAGTCTGACCTGGCTAATAATCGTGATCTGACACATGGTATTGGTGTCTCACATGCACGTTGTTCTGGAGGACTAGATCTTGACTTGAACCGAATTGATGACGCTCCCGATCCAAGCAACTTCTCCTTGAACAACTGTCGTAGAATAGATGCTCCTCTTAATGTTAAATCATCGACTGTTCCTCTCAATGACAAGGTGAATTTTCGTAGGGACTTTGATTTAAATGGACCTATTGTTGATGAGACCCCTACTGAACCATCAATATTTCCTCAGCATGCTAGAGGCAGTATGCCATCCCAGCCTTCTGTTTCAGGTCTTTGGATGAACAGTGCAGAAATGGGAAATTTTCCATCATGGTTTCCTCCAGGGAATGCTTATTCAGCTGTTGCAATTCCATCGATTTTGCCTGATAGAGCAGAACAGCCTTTTCCAGTTGTTGCAACAAATGGACCACCCAGGATTTTGGGACCCACAAGTGGTAGCAGTCCATATAACCCTGATGTCTTTAGAGGGCCAGTATTATCATCTTCTCCGGCTGTGCCATTTCCTTCTGCAGCTTTTCAGTATCCTGTCCTGTCTTTTGGAAACGGCTTTCCTCTACCGTCAGCCACGTTTTCAGGTAATGCAACAGCATATGGCGATTCATCATCTGGTAGCAGGCTTTGCTTCCCTGCAGTCCCCTCACAGTTCCTAGGTCCTCCTGGTACAGTATCAACCCCTTATCCAAGACCTTATGTTGTCAGTCACTCAGATGGCGGCCACAATACTAGTTCTGATAGTAGTAGAAAGTGGGGAAGACAAGGTTTAGATCTAAATGCTGGACCTGTAGTTGCAGACATGGAAGGAAGAGAGGAATCATCATCCTTTGTACCCAGGCAACCATCTGTTGCCAGTTCGCAGGCCACTACCGAGGAGCATATGCGGGTTTACCAGCCAACAATTGGCATAATGAAGAGAAAGGAACCAGAGGGAGGATGGGATGGGTACAAACAGTCGTCATGGTAG 5442 44.06 MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYDSATALKENTLLVVYGVGMHLDSYRLQVEVGRLQNYGSSLGMILISYGAEVNVPNQASTYRESHRRTRSSEICRDEEDGKRPVISESVFQNQHLYAVELIIKGHDALAALCIDLGFLGKRIALNWLSSVELGLGLMVLVQREGGIETGIGENARLCMGVEVRTGNGLGTCGQSSHVGGRRISVGDCALFKPPQDSPPFIGIIRWLTVGKENKLKLGVNWLYRSSELNLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDVKLSSGISSFVCRRVYDITNKCLWWLTDQDYINERQEEVDQLLYKTRLEMHASVQSGGRSPKPTSGPTSTSQLKANSDSVQTTAFPSHTKGKKRERSDQGLESVKRERIIKADEGDSANCRLENTLKSEIAKIAEKGGLVDSEAVEKLVQLLLTDRNDKKIDWACRSALAGVIAATDKVECLSQFVHLKGLLVLDEWLQEVHRGKIGSGGSPKDSDKSVEEFLLVLLRALDKLPVNLPALQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEVEMNINDAKSGSNQAVAWSARTRPSEVSHGGRNQDASSEVAMKSSVSQLTTSKSVSVKLAQDESVTRSASASPGSIKPVLSPASASINSKDGSTRNPGVCGTTDLAQTIAKDEKSSSSSQSHNNSQSCSSEHGKSGGLGKEDARSSTAGSMSVNKISGGGSRQRKSVNGFPGSVLSGAQRDVGSGKSSLHRNTVLERSSQSGMTFEKACDGPIVEGNSPKLIVKITNRGRSPAQSASGGSSEDPSIMNTRASSPPLSEKLDQFDHSKSDTCQPNITGDVNAEPWQNSDVKDMVTGADDGDGSPAAVNGEERCRTAEDVKVSKTNSSSLANDQKNGKLHEASFSSMNALIESCIKCSEASMPTSLTDNVGMNLLASVAAVEMSKSDFVLPSDTQGNITTVDRRGSDCKVKASCPEEDSRDNMQSNDAMVVNEQGVIIGSFGANGDGSSASHSEEKPIGDLNGHSKSSGVNLQQTAVPLADGCIKMDEAGGPASPARIPEKGSEIDGANPVKDRKTSDVVDEDSSPESRPKPSSSFPDGGMVVDGISNREVEMNVVDKPLHRFQEADDNTDNRMNGVSTADQRPSSKSNSDSAKLKNDELFQASGSSSDLVSINASGMKGEKDDETNESADVKQLEKHQSDRDSMPSESRDLGGLCSAINHEDEHAEENLECNEDNEKSGVQTHHGQSIMSPVQETEQHLPSKRSKLAGVEAEEAEESTSTAADPGSMTAAGVSDVDAKLEFDLNEGFNVDDGKCSEPSSFTTSGCLTTVQLISPLPLPVSNVVSNIPASITVAAAAKRPFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKVLEMPLGVATTPLADAVANKTSRPPLDIDLNVPDERILEDMNGQMSTQDVASKSDLANNRDLTHGIGVSHARCSGGLDLDLNRIDDAPDPSNFSLNNCRRIDAPLNVKSSTVPLNDKVNFRRDFDLNGPIVDETPTEPSIFPQHARGSMPSQPSVSGLWMNSAEMGNFPSWFPPGNAYSAVAIPSILPDRAEQPFPVVATNGPPRILGPTSGSSPYNPDVFRGPVLSSSPAVPFPSAAFQYPVLSFGNGFPLPSATFSGNATAYGDSSSGSRLCFPAVPSQFLGPPGTVSTPYPRPYVVSHSDGGHNTSSDSSRKWGRQGLDLNAGPVVADMEGREESSSFVPRQPSVASSQATTEEHMRVYQPTIGIMKRKEPEGGWDGYKQSSW 1813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 673801 684517 - CmoCh10G001470.1 Cmo10g00147 389493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 1213 1243 - -
Cmo10g00147 1813 ProSiteProfiles TFIIS N-terminal domain profile. 513 599 IPR017923 -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 864 880 - -
Cmo10g00147 1813 SMART TFS2_5 519 598 IPR003617 GO:0005634
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 1767 1786 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 1277 1293 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 1035 1064 - -
Cmo10g00147 1813 Gene3D - 222 449 IPR043151 -
Cmo10g00147 1813 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 231 1813 - -
Cmo10g00147 1813 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 231 1813 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 742 770 - -
Cmo10g00147 1813 SMART BAH_4 233 348 IPR001025 GO:0003682
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 115 132 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 825 853 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 608 810 - -
Cmo10g00147 1813 ProSiteProfiles BAH domain profile. 233 348 IPR001025 GO:0003682
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 373 427 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 1101 1123 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 378 408 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 1252 1276 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 1760 1813 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 409 427 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 1079 1325 - -
Cmo10g00147 1813 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 463 599 IPR035441 -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 608 730 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 1556 1575 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 1294 1308 - -
Cmo10g00147 1813 CDD TFIIS_I 521 597 - -
Cmo10g00147 1813 Pfam BAH domain 235 342 IPR001025 GO:0003682
Cmo10g00147 1813 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 501 610 IPR035441 -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 777 802 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 825 929 - -
Cmo10g00147 1813 Pfam TFIIS helical bundle-like domain 547 596 IPR017923 -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 1149 1164 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 112 132 - -
Cmo10g00147 1813 MobiDBLite consensus disorder prediction 1165 1209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00147 - - - bhj:120071278 2757.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00147 Cmo11g00110 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01488 Cmo-Chr2:8715226 Cmo10g00147 Cmo-Chr10:673801 7.13E-24 dispersed
Cmo10g00147 Cmo-Chr10:673801 Cmo15g01291 Cmo-Chr15:8854091 4.83E-19 dispersed
Cmo10g00147 Cmo-Chr10:673801 Cmo11g00110 Cmo-Chr11:574781 0 wgd
Cmo10g00147 Cmo-Chr10:673801 Cmo11g01707 Cmo-Chr11:12114958 0 wgd
Cmo10g00147 Cmo-Chr10:673801 Cmo14g00643 Cmo-Chr14:3235332 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10419 PF01426 BAH 1.30E-08 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00147 Cmo_Chr10 FPKM 7.909759 7.495954 5.976665 6.277897 9.595057 8.374376 10.981074 5.928251 5.569674 5.169703