Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00162 | ATGGCGATTCATATTCCCAGTCGGCAGCTATTCATCGATGGCGAGTGGAGGGAACCAGTTCTCAAGAAACGCATCCCCATCGTCAACCCCGCCACTGAACAAACAATCGGTCTCTTCTTCTTAACTTCTCTGTTTATGACTGTTGTTAATTTTGTTTGCCAACTTCTAATCGTTGTGCGGATCGGATCTATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCAGTTGATGCTGCCCGAAAAGCTCTTGCGAGGAATAAAGGCAAAGATTGGGCATCTGCTTCGGGGGCTCTTCGTGCCAAGTATTTGCGTGCTATTGCTGCTAAGGTGAGTCGGAGTTCCATAACAGAGAGGAAATCGGAATTAGCAAAGCTCGAAACAATAGACTGTGGAAAACCCCTGGACGAAACTGCATGGGACATTGATGATGTTGCTGGGTGCTTCGAGTACTATGCAGATCTTGCCGAAGGGTTGGATGCTAAGCAAAAAGCTCCTGTTTCCGTTCCCATGGATACATTCAAAAGCCATGTTCTTAAAGAACCCATTGGAGTTGTTGGGTTGATTACTCCCTGGAACTATCCTCTATTGATGGCTGCATGGAAAGTTGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATATTGAAGCCATCAGAACTGGCATCTGTCACCTGTTTGGAACTGGGTGAAATCTGTAAAGATGTTGGTCTTCCATCTGGTATTTTGAATATTCTGACAGGATTTGGCCCTGAAGCTGGTGCTCCTCTAGCATCTCATCCTCACGTTGACAAGATTGCATTTACTGGGAGTTGTGCTACTGGAAGCAAGATTATGACAGCAGCTGCCCAACTGGTCAAGCCTGTAACTATGGAACTTGGTGGGAAAAGTCCAATTGTTGTTTTTGATGATGTCGACCTTGACAAGGCTGCCGAATGGACGATTTTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCCCGCCTGCTTGTACATGAAAACATTGCTGATGAATTCTTGGATAGGCTCGTGAAGTGGTGCCAGAACATTAAGATTTCAGATCCTTTAGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTGCGGGACAGTATGAGAAAGTTCTGAACTTCGTCTCAACTGCTGAGCGCGAAGGTGCAAAGCTTCTATTTGGTGGAGTTCGCCCTAAGCACCTAAAGAAGGGATACTTCGTTGAACCAGCCATTGTTACTAACGTCACAACCTCCATGCAACTATGGAGAGAAGAGGTCTTTGGACCTGTTCTATGTGTGAAGACTTTTAGTTCTGAAGATGAAGCTATTGAATTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTAATATCAAATGATTTAGAAAGGTGTGAGCGTGTAACCAAGGCTTTACAGGCAGGAATTGTGTGGGTTAATTGCTCCCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAACTCGGGGAATGGGGACTTGATAATTATCTGACTGTAAAGCAGGTTACTGAGTATGTTTCCAATGAACCATGGGGATGGTACAAGTCTCCTTCTAAATTGTAG | 1602 | 45.88 | MAIHIPSRQLFIDGEWREPVLKKRIPIVNPATEQTIGLFFLTSLFMTVVNFVCQLLIVVRIGSIPAATAEDVELAVDAARKALARNKGKDWASASGALRAKYLRAIAAKVSRSSITERKSELAKLETIDCGKPLDETAWDIDDVAGCFEYYADLAEGLDAKQKAPVSVPMDTFKSHVLKEPIGVVGLITPWNYPLLMAAWKVAPALAAGCAAILKPSELASVTCLELGEICKDVGLPSGILNILTGFGPEAGAPLASHPHVDKIAFTGSCATGSKIMTAAAQLVKPVTMELGGKSPIVVFDDVDLDKAAEWTIFGCFWTNGQICSATSRLLVHENIADEFLDRLVKWCQNIKISDPLEEGCRLGPVVSAGQYEKVLNFVSTAEREGAKLLFGGVRPKHLKKGYFVEPAIVTNVTTSMQLWREEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCERVTKALQAGIVWVNCSQPCFTQAPWGGNKRSGFGRELGEWGLDNYLTVKQVTEYVSNEPWGWYKSPSKL | 533 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 733141 | 738508 | + | CmoCh10G001620.1 | Cmo10g00162 | 389508 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00162 | 533 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 297 | 488 | IPR016163 | GO:0016620 | |
Cmo10g00162 | 533 | PANTHER | BETAINE ALDEHYDE DEHYDROGENASE | 1 | 37 | - | - | |
Cmo10g00162 | 533 | PANTHER | BETAINE ALDEHYDE DEHYDROGENASE | 61 | 530 | - | - | |
Cmo10g00162 | 533 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 61 | 513 | IPR016162 | GO:0016491 | |
Cmo10g00162 | 533 | SUPERFAMILY | ALDH-like | 4 | 517 | IPR016161 | GO:0016491 | |
Cmo10g00162 | 533 | CDD | ALDH_F10_BADH | 27 | 517 | - | - | |
Cmo10g00162 | 533 | Pfam | Aldehyde dehydrogenase family | 61 | 515 | IPR015590 | GO:0016491 | |
Cmo10g00162 | 533 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 317 | 328 | IPR016160 | GO:0016491 | |
Cmo10g00162 | 533 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 289 | 296 | IPR029510 | GO:0016491 | |
Cmo10g00162 | 533 | PANTHER | BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC | 1 | 37 | - | - | |
Cmo10g00162 | 533 | PANTHER | BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC | 61 | 530 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00162 | Cmo-Chr10:733141 | Cmo11g00105 | Cmo-Chr11:548605 | 3.29E-115 | dispersed | |
Cmo13g00961 | Cmo-Chr13:8317712 | Cmo10g00162 | Cmo-Chr10:733141 | 3.80E-11 | dispersed | |
Cmo10g00162 | Cmo-Chr10:733141 | Cmo12g00001 | Cmo-Chr12:477 | 8.09E-115 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00162 | K00130 | - | csv:101213657 | 928.317 |