Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00162 ATGGCGATTCATATTCCCAGTCGGCAGCTATTCATCGATGGCGAGTGGAGGGAACCAGTTCTCAAGAAACGCATCCCCATCGTCAACCCCGCCACTGAACAAACAATCGGTCTCTTCTTCTTAACTTCTCTGTTTATGACTGTTGTTAATTTTGTTTGCCAACTTCTAATCGTTGTGCGGATCGGATCTATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCAGTTGATGCTGCCCGAAAAGCTCTTGCGAGGAATAAAGGCAAAGATTGGGCATCTGCTTCGGGGGCTCTTCGTGCCAAGTATTTGCGTGCTATTGCTGCTAAGGTGAGTCGGAGTTCCATAACAGAGAGGAAATCGGAATTAGCAAAGCTCGAAACAATAGACTGTGGAAAACCCCTGGACGAAACTGCATGGGACATTGATGATGTTGCTGGGTGCTTCGAGTACTATGCAGATCTTGCCGAAGGGTTGGATGCTAAGCAAAAAGCTCCTGTTTCCGTTCCCATGGATACATTCAAAAGCCATGTTCTTAAAGAACCCATTGGAGTTGTTGGGTTGATTACTCCCTGGAACTATCCTCTATTGATGGCTGCATGGAAAGTTGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATATTGAAGCCATCAGAACTGGCATCTGTCACCTGTTTGGAACTGGGTGAAATCTGTAAAGATGTTGGTCTTCCATCTGGTATTTTGAATATTCTGACAGGATTTGGCCCTGAAGCTGGTGCTCCTCTAGCATCTCATCCTCACGTTGACAAGATTGCATTTACTGGGAGTTGTGCTACTGGAAGCAAGATTATGACAGCAGCTGCCCAACTGGTCAAGCCTGTAACTATGGAACTTGGTGGGAAAAGTCCAATTGTTGTTTTTGATGATGTCGACCTTGACAAGGCTGCCGAATGGACGATTTTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCCCGCCTGCTTGTACATGAAAACATTGCTGATGAATTCTTGGATAGGCTCGTGAAGTGGTGCCAGAACATTAAGATTTCAGATCCTTTAGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTGCGGGACAGTATGAGAAAGTTCTGAACTTCGTCTCAACTGCTGAGCGCGAAGGTGCAAAGCTTCTATTTGGTGGAGTTCGCCCTAAGCACCTAAAGAAGGGATACTTCGTTGAACCAGCCATTGTTACTAACGTCACAACCTCCATGCAACTATGGAGAGAAGAGGTCTTTGGACCTGTTCTATGTGTGAAGACTTTTAGTTCTGAAGATGAAGCTATTGAATTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTAATATCAAATGATTTAGAAAGGTGTGAGCGTGTAACCAAGGCTTTACAGGCAGGAATTGTGTGGGTTAATTGCTCCCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAACTCGGGGAATGGGGACTTGATAATTATCTGACTGTAAAGCAGGTTACTGAGTATGTTTCCAATGAACCATGGGGATGGTACAAGTCTCCTTCTAAATTGTAG 1602 45.88 MAIHIPSRQLFIDGEWREPVLKKRIPIVNPATEQTIGLFFLTSLFMTVVNFVCQLLIVVRIGSIPAATAEDVELAVDAARKALARNKGKDWASASGALRAKYLRAIAAKVSRSSITERKSELAKLETIDCGKPLDETAWDIDDVAGCFEYYADLAEGLDAKQKAPVSVPMDTFKSHVLKEPIGVVGLITPWNYPLLMAAWKVAPALAAGCAAILKPSELASVTCLELGEICKDVGLPSGILNILTGFGPEAGAPLASHPHVDKIAFTGSCATGSKIMTAAAQLVKPVTMELGGKSPIVVFDDVDLDKAAEWTIFGCFWTNGQICSATSRLLVHENIADEFLDRLVKWCQNIKISDPLEEGCRLGPVVSAGQYEKVLNFVSTAEREGAKLLFGGVRPKHLKKGYFVEPAIVTNVTTSMQLWREEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCERVTKALQAGIVWVNCSQPCFTQAPWGGNKRSGFGRELGEWGLDNYLTVKQVTEYVSNEPWGWYKSPSKL 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 733141 738508 + CmoCh10G001620.1 Cmo10g00162 389508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00162 533 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 297 488 IPR016163 GO:0016620
Cmo10g00162 533 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 37 - -
Cmo10g00162 533 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 61 530 - -
Cmo10g00162 533 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 513 IPR016162 GO:0016491
Cmo10g00162 533 SUPERFAMILY ALDH-like 4 517 IPR016161 GO:0016491
Cmo10g00162 533 CDD ALDH_F10_BADH 27 517 - -
Cmo10g00162 533 Pfam Aldehyde dehydrogenase family 61 515 IPR015590 GO:0016491
Cmo10g00162 533 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 317 328 IPR016160 GO:0016491
Cmo10g00162 533 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 289 296 IPR029510 GO:0016491
Cmo10g00162 533 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 37 - -
Cmo10g00162 533 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 61 530 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00162 Cmo-Chr10:733141 Cmo11g00105 Cmo-Chr11:548605 3.29E-115 dispersed
Cmo13g00961 Cmo-Chr13:8317712 Cmo10g00162 Cmo-Chr10:733141 3.80E-11 dispersed
Cmo10g00162 Cmo-Chr10:733141 Cmo12g00001 Cmo-Chr12:477 8.09E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00162 K00130 - csv:101213657 928.317