Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00162 ATGGCGATTCATATTCCCAGTCGGCAGCTATTCATCGATGGCGAGTGGAGGGAACCAGTTCTCAAGAAACGCATCCCCATCGTCAACCCCGCCACTGAACAAACAATCGGTCTCTTCTTCTTAACTTCTCTGTTTATGACTGTTGTTAATTTTGTTTGCCAACTTCTAATCGTTGTGCGGATCGGATCTATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCAGTTGATGCTGCCCGAAAAGCTCTTGCGAGGAATAAAGGCAAAGATTGGGCATCTGCTTCGGGGGCTCTTCGTGCCAAGTATTTGCGTGCTATTGCTGCTAAGGTGAGTCGGAGTTCCATAACAGAGAGGAAATCGGAATTAGCAAAGCTCGAAACAATAGACTGTGGAAAACCCCTGGACGAAACTGCATGGGACATTGATGATGTTGCTGGGTGCTTCGAGTACTATGCAGATCTTGCCGAAGGGTTGGATGCTAAGCAAAAAGCTCCTGTTTCCGTTCCCATGGATACATTCAAAAGCCATGTTCTTAAAGAACCCATTGGAGTTGTTGGGTTGATTACTCCCTGGAACTATCCTCTATTGATGGCTGCATGGAAAGTTGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATATTGAAGCCATCAGAACTGGCATCTGTCACCTGTTTGGAACTGGGTGAAATCTGTAAAGATGTTGGTCTTCCATCTGGTATTTTGAATATTCTGACAGGATTTGGCCCTGAAGCTGGTGCTCCTCTAGCATCTCATCCTCACGTTGACAAGATTGCATTTACTGGGAGTTGTGCTACTGGAAGCAAGATTATGACAGCAGCTGCCCAACTGGTCAAGCCTGTAACTATGGAACTTGGTGGGAAAAGTCCAATTGTTGTTTTTGATGATGTCGACCTTGACAAGGCTGCCGAATGGACGATTTTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCCCGCCTGCTTGTACATGAAAACATTGCTGATGAATTCTTGGATAGGCTCGTGAAGTGGTGCCAGAACATTAAGATTTCAGATCCTTTAGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTGCGGGACAGTATGAGAAAGTTCTGAACTTCGTCTCAACTGCTGAGCGCGAAGGTGCAAAGCTTCTATTTGGTGGAGTTCGCCCTAAGCACCTAAAGAAGGGATACTTCGTTGAACCAGCCATTGTTACTAACGTCACAACCTCCATGCAACTATGGAGAGAAGAGGTCTTTGGACCTGTTCTATGTGTGAAGACTTTTAGTTCTGAAGATGAAGCTATTGAATTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTAATATCAAATGATTTAGAAAGGTGTGAGCGTGTAACCAAGGCTTTACAGGCAGGAATTGTGTGGGTTAATTGCTCCCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAACTCGGGGAATGGGGACTTGATAATTATCTGACTGTAAAGCAGGTTACTGAGTATGTTTCCAATGAACCATGGGGATGGTACAAGTCTCCTTCTAAATTGTAG 1602 45.88 MAIHIPSRQLFIDGEWREPVLKKRIPIVNPATEQTIGLFFLTSLFMTVVNFVCQLLIVVRIGSIPAATAEDVELAVDAARKALARNKGKDWASASGALRAKYLRAIAAKVSRSSITERKSELAKLETIDCGKPLDETAWDIDDVAGCFEYYADLAEGLDAKQKAPVSVPMDTFKSHVLKEPIGVVGLITPWNYPLLMAAWKVAPALAAGCAAILKPSELASVTCLELGEICKDVGLPSGILNILTGFGPEAGAPLASHPHVDKIAFTGSCATGSKIMTAAAQLVKPVTMELGGKSPIVVFDDVDLDKAAEWTIFGCFWTNGQICSATSRLLVHENIADEFLDRLVKWCQNIKISDPLEEGCRLGPVVSAGQYEKVLNFVSTAEREGAKLLFGGVRPKHLKKGYFVEPAIVTNVTTSMQLWREEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCERVTKALQAGIVWVNCSQPCFTQAPWGGNKRSGFGRELGEWGLDNYLTVKQVTEYVSNEPWGWYKSPSKL 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 733141 738508 + CmoCh10G001620.1 Cmo10g00162 389508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00162 533 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 297 488 IPR016163 GO:0016620
Cmo10g00162 533 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 37 - -
Cmo10g00162 533 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 61 530 - -
Cmo10g00162 533 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 513 IPR016162 GO:0016491
Cmo10g00162 533 SUPERFAMILY ALDH-like 4 517 IPR016161 GO:0016491
Cmo10g00162 533 CDD ALDH_F10_BADH 27 517 - -
Cmo10g00162 533 Pfam Aldehyde dehydrogenase family 61 515 IPR015590 GO:0016491
Cmo10g00162 533 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 317 328 IPR016160 GO:0016491
Cmo10g00162 533 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 289 296 IPR029510 GO:0016491
Cmo10g00162 533 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 37 - -
Cmo10g00162 533 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 61 530 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00162 K00130 betB, gbsA; betaine-aldehyde dehydrogenase [EC:1.2.1.8] - csv:101213657 928.317
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00162 Cmo-Chr10:733141 Cmo11g00105 Cmo-Chr11:548605 3.29E-115 dispersed
Cmo13g00961 Cmo-Chr13:8317712 Cmo10g00162 Cmo-Chr10:733141 3.80E-11 dispersed
Cmo10g00162 Cmo-Chr10:733141 Cmo12g00001 Cmo-Chr12:477 8.09E-115 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g684 . . Bda06g00575 . Bpe12g00577 . . . . . Cma10g00151 . Car10g00142 . . . . . . . . . . . Cla06g01634 Cam06g1817 Cec06g1867 Cco06g1872 Clacu06g1775 Cmu06g1717 Cre06g2537 . . . . . . . . Blo13g00042 Blo15g00282 . . Bpe07g00817 . . Bma08g00185 . Cmo10g00162 . . . . . . Cpe18g00825 . . . . . . . . . . . . . . Lsi06g01516 Csa01g00183 Chy02g02550 Cme02g01936
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g00644 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 71.6 1.5e-213 739.6
Cmo11g00602 . 6 501 Aldehyde Dehydrogenase Gene Family AT3G24503 68.7 1.5e-208 723.0
Cmo12g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 6.4e-159 558.1
Cmo05g00005 . 3 475 Aldehyde Dehydrogenase Gene Family AT3G24503 55.3 2.1e-154 543.1
Cmo11g00105 . 68 552 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 4.7e-154 542.0
Cmo11g00105 . 1 552 Aldehyde Dehydrogenase Gene Family AT3G48000 78.6 4.2e-257 884.4
Cmo12g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 76.8 3.2e-249 858.2
Cmo05g00005 . 8 475 Aldehyde Dehydrogenase Gene Family AT3G48000 79.1 8.7e-231 797.0
Cmo10g00644 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.5 1.1e-161 567.4
Cmo11g00602 . 17 501 Aldehyde Dehydrogenase Gene Family AT3G48000 52.8 3.7e-157 552.4
Cmo12g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.8 1.9e-169 592.8
Cmo11g00105 . 1 396 Aldehyde Dehydrogenase Gene Family AT1G23800 72.2 6.7e-167 584.3
Cmo05g00005 . 3 319 Aldehyde Dehydrogenase Gene Family AT1G23800 81.1 3.5e-155 545.4
Cmo10g00644 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.6 4.8e-104 375.6
Cmo11g00602 . 17 345 Aldehyde Dehydrogenase Gene Family AT1G23800 54.4 5.8e-102 368.6
Cmo01g01433 CST 3 485 Aldehyde Dehydrogenase Gene Family AT4G34240 63.4 1.7e-181 633.3
Cmo09g00776 CST 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 62.6 5.9e-179 624.8
Cmo09g00775 . 66 523 Aldehyde Dehydrogenase Gene Family AT4G34240 64.0 4.1e-172 602.1
Cmo09g00775 . 111 521 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 3.7e-176 615.1
Cmo01g01433 CST 73 483 Aldehyde Dehydrogenase Gene Family AT1G44170 71.0 8.2e-176 614.0
Cmo09g00776 CST 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 1.2e-174 610.1
Cmo16g00705 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G36250 61.5 2.3e-182 636.0
Cmo02g01283 . 5 497 Aldehyde Dehydrogenase Gene Family AT4G36250 53.8 5.0e-153 538.5
Cmo20g00311 . 39 553 Aldehyde Dehydrogenase Gene Family AT1G79440 75.0 6.8e-228 787.3
Cmo02g00667 . 29 447 Aldehyde Dehydrogenase Gene Family AT1G79440 55.2 4.5e-147 518.8
Cmo11g01452 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 84.3 5.3e-245 844.3
Cmo03g00888 . 211 615 Aldehyde Dehydrogenase Gene Family AT2G14170 69.4 1.9e-170 596.7
Cmo10g00162 . 1 531 Aldehyde Dehydrogenase Gene Family AT1G74920 76.1 2.6e-245 845.1
Cmo10g00162 . 1 533 Aldehyde Dehydrogenase Gene Family AT3G48170 76.7 4.8e-247 850.9
Cmo12g01175 . 72 567 Aldehyde Dehydrogenase Gene Family AT2G24270 90.3 1.9e-267 918.7
Cmo05g01265 . 23 143 Aldehyde Dehydrogenase Gene Family AT2G24270 81.1 2.2e-50 197.6
Cmo13g00961 . 32 590 Aldehyde Dehydrogenase Gene Family AT5G62530 75.2 5.2e-255 877.5
Cmo17g00356 CST 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.0 2.3e-277 951.8
Cmo08g01242 CST 1 588 Aldehyde Dehydrogenase Gene Family AT3G66658 74.3 2.5e-271 931.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007146 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 3 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00162 Cmo_Chr10 FPKM 4.394222 4.826853 3.731732 3.206819 14.755279 13.843262 14.87046 3.6293 3.441015 3.180417