Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00163 ATGGGGAGCGCAGAGGAGAAGGTTGTTGCTGTGATCATGGTCGGCGGCCCCACTAAAGGAACTAGATTTCGACCACTGTCATTGAATATTCCGAAGCCTCTTTTTCCTTTGGCGGGACAGCCGATGGTGCATCACCCAATTTCTGCTTGTAAAAGGATTCCAAACCTGGCTCAGATTTTTCTTATTGGCTTCTATGAGGAGCGTGAATTTGCACTGTATTTATCTTCCATTTCTAATGAACTCAAAGTCCCTATTAGATATTTGAAGGAACAGAAGCCTCATGGTTCTGCTGGTGGCCTTTTTCACTTCAGAGATCTGATCATGGAAGACAGTCCGTCGCATATCTTCTTGCTGAATTGTGACGTTTGCTCGAGTTTTCCACTCCCGCAAATGCTAGGTAGCTGTACTTGTTTTCTTTTGATCCAATTTTTTGTCCCCGACGCCCTCGTGCTCGTATTAGTTAAGATTGATTTTCACCCAAGAAACGATGCTCACAAAAGATATGGAGGGATGGGAACAATCCTTGTAATCAGAGTTTCTGCTGAGGCAGCTCACCAGTTTGGAGAGTTGGTCGCCGATCCAACGACAAATGAACTACTTCATTATGCCGAAAAACCCGAAACTTTTGTGAGCGATCTTATAAACTGCGGTGTCTACATATTTACACCGGATATATTTTCTGCAATTCAAGGCGTTTCCACGCAGCGGAAAGAGAGAGCGAATTTAAGTCGATTATCTAGCTTTGAAGCCCTCCAATCTGCAGCAACAAGTTCGTCTAACAGGAGCTTGCCGAAAGACTATGTAAGATTGGATCAAGACATCCTATCGCCTTTTGCAGGGAAGAAACAGTTATATACGTATGAAACTATGGACTTCTGGGAACAAATCAAAACGCCTGCAATGTCCTTGAAATGCTCTGGCTTATATCTCCTCCAATACCGTGTCACCTCCCCCGACCTATTGGCAAATGGAGATGGTACGAAAAATGCTATCATCACCGGGGATGTTTATATTCATCCTTCAGCTAAAGTACATCCAACAGCCAAGATTGGTCCTAATGTCTCAATATCGGCTAATGCTCGAATTGGAGCTGGTTCTAGGCTCATCAGCTGTATCATCCTTGATGATGTTGAAATTCAAGATAATGCAGTTGTCATTCACGCCATTGTTGGGTGGAAATCTTCCATTGGTCGATGGTCTCGTGCTGATGGAGATTACTATGCAAAGCGAGGAGTTACAATTCTAGGTGAAGCGGTCGCGGTTGAGGACGAAGTAGTGGTGACAAACAGCATTGTACTCCCAAACAAGACTCTCAACATGAGTGTTCAAGAGGAGATTATTCTATGA 1347 43.95 MGSAEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLAGQPMVHHPISACKRIPNLAQIFLIGFYEEREFALYLSSISNELKVPIRYLKEQKPHGSAGGLFHFRDLIMEDSPSHIFLLNCDVCSSFPLPQMLGSCTCFLLIQFFVPDALVLVLVKIDFHPRNDAHKRYGGMGTILVIRVSAEAAHQFGELVADPTTNELLHYAEKPETFVSDLINCGVYIFTPDIFSAIQGVSTQRKERANLSRLSSFEALQSAATSSSNRSLPKDYVRLDQDILSPFAGKKQLYTYETMDFWEQIKTPAMSLKCSGLYLLQYRVTSPDLLANGDGTKNAIITGDVYIHPSAKVHPTAKIGPNVSISANARIGAGSRLISCIILDDVEIQDNAVVIHAIVGWKSSIGRWSRADGDYYAKRGVTILGEAVAVEDEVVVTNSIVLPNKTLNMSVQEEIIL 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 739185 744390 + CmoCh10G001630.1 Cmo10g00163 389509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00163 448 Gene3D Hexapeptide repeat proteins 322 445 - -
Cmo10g00163 448 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 3 133 - -
Cmo10g00163 448 PANTHER ADP-GLUCOSE PYROPHOSPHORYLASE FAMILY PROTEIN 163 448 - -
Cmo10g00163 448 Pfam Nucleotidyl transferase 10 132 IPR005835 GO:0009058|GO:0016779
Cmo10g00163 448 Pfam Nucleotidyl transferase 156 249 IPR005835 GO:0009058|GO:0016779
Cmo10g00163 448 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 143 310 IPR029044 -
Cmo10g00163 448 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 2 136 IPR029044 -
Cmo10g00163 448 SUPERFAMILY Nucleotide-diphospho-sugar transferases 131 392 IPR029044 -
Cmo10g00163 448 SUPERFAMILY Nucleotide-diphospho-sugar transferases 7 237 IPR029044 -
Cmo10g00163 448 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 163 448 - -
Cmo10g00163 448 PANTHER ADP-GLUCOSE PYROPHOSPHORYLASE FAMILY PROTEIN 3 133 - -
Cmo10g00163 448 CDD M1P_guanylylT_A_like_N 10 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00163 K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] - csv:101213901 751.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00163 Cmo-Chr10:739185 Cmo11g01079 Cmo-Chr11:6046793 0 dispersed
Cmo10g00163 Cmo-Chr10:739185 Cmo14g00633 Cmo-Chr14:3185412 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g682 . . Bda06g00574 . Bpe12g00576 Bpe13g00205 Bma06g00254 . . . . . . . Sed08g0170 . Cpe04g01534 Bhi02g00389 Tan09g2197 Cmetu05g0932 . Hepe09g0166 . . Cla06g01633 Cam06g1816 Cec06g1866 . Clacu06g1774 Cmu06g1716 Cre06g2536 . . Cone13ag0117 Cone19ag0119 . . . . Blo13g00041 . Bda11g01604 . Bpe07g00816 . . Bma08g00186 . Cmo10g00163 . . . . . . . . . . . . . . . . . . . . . Lsi06g01515 Csa01g00184 Chy02g02549 Cme02g01935
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001958 2 5 2 3 3 2 2 1 2 2 2 2 2 2 2 3 2 3 2 2 2 2 2 2 2 2 1 4 2 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00163 Cmo_Chr10 FPKM 1.445946 2.000482 1.02216 0.782902 0.920446 0.671541 1.398539 0.905132 0.968881 1.503917