Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00164 ATGGCGAATCTTCTACTATCGGATTCTTCTTCGAAAGCTTATAGCCGGAAGCAGAAATCCCTCGGTCTGCTCTGCTCCAATTTTTTGAGGTTGTATGATCGAGGTGATGTTCACTCAATCAGCCTCGACAATGCCGCCTCTCGGCTAGGTGTTGAAAGGCGACGGATCTACGACATTGTCAACGTTTTAGAAAGTGTTGGAATTCTTTGTAGAAAGGCCAAGAATCAATATAGTTGGATTGGATTTTCTGGCATTCCAAAGGCACTACGGCAACTTAAGGAAGAAGATATGAAGGGAAATAACTCTGCCATAGCTTCCTATGATCACTCAAGATTGATAGATGAAGATGAAACATGTTCAGATCTCACTTCTGTGAGCCATGAGTCAATCCCTATGATGTCTAAATCTTCAGCCTCAGTGAGATGTGTGGCGTCAGAAAACCGGAGGGAAAAATCTCTTGCACTTCTTACGCAGAATTTTGTCAAGCTCTTTGTCTGTTCTAACGCACATCTGATTTCACTCGATGAAGCTGCAAAATTACTGCTAGGCGATACACAAAGTGAATCCGTAATGAGAAGCAAAATCAGACGCCTTTACGATATTGCAAATGTGTTAGCTGCAATTCATCTTATTGAAAAGACGCATACCGTTGATACCAGAAAGCCTGCATTCAGGTGGTTAGGATTTAGAGGTAAAGTTGAGAATTGTCGTGCAGGCAAGCCAATTCCATGTGGTTCAAATAAAAGGACTTTTGGAACCGATATAACTAATATCAACTTGAAGAGAAACAAAGTGGTCAATTCATTTGATCTGAATAAGAGCCCCAATTCCCAGAAACATATGCATGTGCATCTTGAGGGTTGTAGAGTTGAAGTAGATTTGAACCAAAGTGGCAAATTTGAGCGCCATCCAAATTCTAAGAGCTTCATATTTGGACCCTTTTCTCCCATTGCTAGATTGGAAGTTAGAGCTTCTAAAAATGAAGTGAAACGGGTTCGTCATAACTGGGTGAGCCTTGCCTCAACTTATCATCCTCAGTATCAGAACCAAGCTTTAAGAGAATTATTCTCTCATTACAAGGATGCCTGGAAGTTATGGTACTCTGAAACTGTGAACAGATCATCAATACAAATTCCTGAGGCATAA 1146 40.92 MANLLLSDSSSKAYSRKQKSLGLLCSNFLRLYDRGDVHSISLDNAASRLGVERRRIYDIVNVLESVGILCRKAKNQYSWIGFSGIPKALRQLKEEDMKGNNSAIASYDHSRLIDEDETCSDLTSVSHESIPMMSKSSASVRCVASENRREKSLALLTQNFVKLFVCSNAHLISLDEAAKLLLGDTQSESVMRSKIRRLYDIANVLAAIHLIEKTHTVDTRKPAFRWLGFRGKVENCRAGKPIPCGSNKRTFGTDITNINLKRNKVVNSFDLNKSPNSQKHMHVHLEGCRVEVDLNQSGKFERHPNSKSFIFGPFSPIARLEVRASKNEVKRVRHNWVSLASTYHPQYQNQALRELFSHYKDAWKLWYSETVNRSSIQIPEA 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 743630 745889 - CmoCh10G001640.1 Cmo10g00164 389510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00164 381 Gene3D - 11 83 IPR036388 -
Cmo10g00164 381 Gene3D - 143 230 IPR036388 -
Cmo10g00164 381 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Cmo10g00164 381 SMART E2F_TDP_2 148 228 IPR003316 GO:0005667|GO:0006355
Cmo10g00164 381 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 9 368 - -
Cmo10g00164 381 SUPERFAMILY Winged helix DNA-binding domain 15 80 IPR036390 -
Cmo10g00164 381 SUPERFAMILY Winged helix DNA-binding domain 150 229 IPR036390 -
Cmo10g00164 381 PANTHER TRANSCRIPTION FACTOR E2F 9 368 IPR015633 GO:0000978|GO:0006357
Cmo10g00164 381 Pfam E2F/DP family winged-helix DNA-binding domain 150 228 IPR003316 GO:0005667|GO:0006355
Cmo10g00164 381 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00164 Cmo18g00114 CCT
Cmo10g00164 Cmo13g00935 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00164 Cmo-Chr10:743630 Cmo20g00168 Cmo-Chr20:850643 8.13E-11 dispersed
Cmo10g00164 Cmo-Chr10:743630 Cmo13g00935 Cmo-Chr13:8209724 3.22E-92 wgd
Cmo10g00164 Cmo-Chr10:743630 Cmo18g00114 Cmo-Chr18:783508 1.20E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10421 PF02319 E2F_TDP 7.90E-20 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00164 K09391 - csv:101210753 541.576