Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00165 ATGGCGGTGGTTCCCGGCGAACTTATTGGGGTTTCTGATGATGATTTGAAACAGAGTGGTTTGGCCCAGATTCATGTTCTTGCTGTTGATGATAGCCTCGTTGATCGGAAGGTTATTGAACGGTTGCTGAAGATCTCGTCTTGTAAAGTGACTGCTGTTGAGAGTGGGAGAAGTGCTCTTCAATATCTGGGTTTGGATGGGGAAGCCAATTCTGTCCGGTTTAGTGATTTGAAGGTGAATCTCATCATCACAGATTATTCCATGCCGGAAATGAATGGATATGAACTGCTGAAGAAGATCAAGGAATCATCGGCTCTCCGGGAGATTCCTGTTGTGATAATGTCATCGGAGAATGTTTTGGGTCGAATAGAGAATTGCTTGAAGGAAGGGGCTGAGGAGTTCATAGTGAAGCCTGTGAAATTGTCTGATGTGAAACGACTGAAAGACTACTTCACTATGGGAGGAGAAAATGGAGGGAAGAAGATAAGTCATAAGAGGAAGCTTCGTGTTGATGATCATGATCATGATCACCACTTCTTGACTCCTGGGTCTCCGCCGCCGCCGCCGCCGATGGTGGGTTTCGACCATTGCCAAGGGTATCTGCAACGAATCACATGTTCGTCGAAGAAACCAAGGTTCCTCAATGGCGACCAGTTCACGTAA 663 46.46 MAVVPGELIGVSDDDLKQSGLAQIHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDGEANSVRFSDLKVNLIITDYSMPEMNGYELLKKIKESSALREIPVVIMSSENVLGRIENCLKEGAEEFIVKPVKLSDVKRLKDYFTMGGENGGKKISHKRKLRVDDHDHDHHFLTPGSPPPPPPMVGFDHCQGYLQRITCSSKKPRFLNGDQFT 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 747025 748134 + CmoCh10G001650.1 Cmo10g00165 389511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00165 220 ProSiteProfiles Response regulatory domain profile. 25 152 IPR001789 GO:0000160
Cmo10g00165 220 SMART REC_2 24 151 IPR001789 GO:0000160
Cmo10g00165 220 CDD REC_typeA_ARR 26 147 - -
Cmo10g00165 220 Pfam Response regulator receiver domain 26 144 IPR001789 GO:0000160
Cmo10g00165 220 Gene3D - 24 171 - -
Cmo10g00165 220 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 14 172 - -
Cmo10g00165 220 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 172 IPR045279 GO:0009736
Cmo10g00165 220 SUPERFAMILY CheY-like 24 146 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01675 Cmo-Chr4:8497777 Cmo10g00165 Cmo-Chr10:747025 1.60E-65 dispersed
Cmo10g00165 Cmo-Chr10:747025 Cmo14g00521 Cmo-Chr14:2633524 4.78E-48 dispersed
Cmo15g00682 Cmo-Chr15:3337861 Cmo10g00165 Cmo-Chr10:747025 5.17E-11 dispersed
Cmo10g00165 Cmo-Chr10:747025 Cmo04g00318 Cmo-Chr4:1580019 8.18E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10422 PF00072 Response_reg 1.30E-21 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00165 K14492 - csv:101214143 278.1