Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00171 ATGCGAAGCACTGCTGCCGTCGTCAATGAATCCCCCGCCGCCGAGACCTGTGGCGGCGGTCCTGGTGAGATCATGCTGTTTGGTGTTAGAGTAGTGGTGGATTCGATGAGGAAGAGCGTGAGTTTGAACAATCTGTCGCAGTACGAGCAACCTCATGAAGCCGCCGATGTAATCACTAACGACAGTAAGAACGACCTTGTTTCCGTTAATAACAAAGATGATGTTGCTGCTGGTTATGCCTCTGCGGATGATGCTGTTCCCAACGCCCGGGGGAACCGCGAGCGTGAGCGCAAGCGAGGCGTGCCTTGGACTGAGGAAGAGCACAAGCTATTTTTGGTTGGACTGCAACAAGTAGGGAAGGGGGATTGGAGAGGAATTTCTAGGAACTTTGTGAAGACTCGCACCCCAACTCAGGTCGCTAGCCACGCTCAGAAATACTTTCTTCGCCGGAGCAATCTAAATCGCCGTCGCCGTAGATCTAGTCTTTTCGATATCACGACGGACACGGTCACGGCTGCTCCAATGGTTGAAGAGCCAACGAAGCGTCAAGAAATTGCCTCTCAATCCCATTCCTTTATTCCATCACCCCCACCTGAAATTTCTAAGCACAATGTAATTCCAGTCGAGCAAACTTTGCCATTTTCGTTTGGGCCAGCACCATTAGCCACCACTCTAACCAAGAATCTGATGGAAAAGTGTGGTCCTGGAGAAGTGAACACAGAAAGTGATGGATCACTGAAGCTCGGCCTCAAGGATTCCATCTTTCCCTCTAATCAGAATCCAACCTCAACTGGTTTGAACTTGAATTCAAACTCAGCAATGGAGTCATCAGCTTTGTCTCTTCGCCTTTCCTTAACATCTGACCAGAGAGAGGCTTCATCAAGACACTCAACTTTCCAGGCCATGCCAAGTTTCAATAATGGTGAGGGCATCATAAGTGCAGCCTAA 948 49.47 MRSTAAVVNESPAAETCGGGPGEIMLFGVRVVVDSMRKSVSLNNLSQYEQPHEAADVITNDSKNDLVSVNNKDDVAAGYASADDAVPNARGNRERERKRGVPWTEEEHKLFLVGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVTAAPMVEEPTKRQEIASQSHSFIPSPPPEISKHNVIPVEQTLPFSFGPAPLATTLTKNLMEKCGPGEVNTESDGSLKLGLKDSIFPSNQNPTSTGLNLNSNSAMESSALSLRLSLTSDQREASSRHSTFQAMPSFNNGEGIISAA 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 772495 774896 + CmoCh10G001710.1 Cmo10g00171 389517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00171 315 PANTHER KIN2 17 315 - -
Cmo10g00171 315 MobiDBLite consensus disorder prediction 252 270 - -
Cmo10g00171 315 MobiDBLite consensus disorder prediction 284 304 - -
Cmo10g00171 315 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
Cmo10g00171 315 MobiDBLite consensus disorder prediction 81 100 - -
Cmo10g00171 315 SUPERFAMILY Homeodomain-like 97 152 IPR009057 -
Cmo10g00171 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 149 IPR006447 GO:0003677
Cmo10g00171 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 151 IPR017930 -
Cmo10g00171 315 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 17 315 - -
Cmo10g00171 315 CDD SANT 102 147 IPR001005 -
Cmo10g00171 315 SMART sant 99 149 IPR001005 -
Cmo10g00171 315 ProSiteProfiles SANT domain profile. 98 151 IPR017884 -
Cmo10g00171 315 MobiDBLite consensus disorder prediction 235 270 - -
Cmo10g00171 315 Pfam Myb-like DNA-binding domain 102 147 IPR001005 -
Cmo10g00171 315 Gene3D - 101 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00171 - - - csv:101214626 484.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00171 Cmo-Chr10:772495 Cmo06g00817 Cmo-Chr6:4432459 6.68E-49 dispersed
Cmo10g00171 Cmo-Chr10:772495 Cmo11g00129 Cmo-Chr11:653243 3.53E-164 wgd
Cmo10g00171 Cmo-Chr10:772495 Cmo13g00941 Cmo-Chr13:8245096 1.48E-63 wgd
Cmo10g00171 Cmo-Chr10:772495 Cmo18g00110 Cmo-Chr18:758497 8.53E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g620 . . Bda06g00532 . . . . Bma12g00976 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo15g00327 . . Bpe07g00766 . . . . Cmo10g00171 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005075 1 1 2 0 2 1 3 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10423 PF00249 Myb_DNA-binding 2.60E-11 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00171 Cmo_Chr10 FPKM 0.509775 0.695107 1.353961 2.188493 3.637697 3.221707 3.506062 1.791333 1.980003 1.893861