Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00175 ATGATTAAATACATGACTATCAAAGTTACTTCAGATGATTTCTTCTTTGATGGACTGAGCAAAGAGGGCAACACGGATAATCCTTTTGGCTTTGGAGCCACACAAGGAAATGTTCTTGCATTTCCTGGACTCAATACACTTGGGCTATCCATGAACCGTGTCGACCTAGCTCGGGGAGGAATAAACGCACCTCATTCGCATCCTCGTGCCTCTGAAAGTGTTGTCGTTATTAAAGGGAAGGTCCTTGTTGGGTTTGTGTCTACAAGTAATGTGTACTATTACAAGGTTTTGACTGAAGGGGAGATGTTTATCATTCCCAGAGGACTGGTTCATTTCCAGTATAATGTTGGACATAGCAAAGCCATTCTACTCACAGCTTTCAATAGTCAGTTGCCGGGGGCTGTGATCGTCTCTCGAACTTTGTTCGCTTCAAATCCTCCAATCCCTCTCGAAATTCTGACCAAGACCTTCCAAGTCGATGATGGTGTTATCAACAGCATAGAGTCCAATGCAACTGCACTACAGATTTATCGGTCAATAAGATACAAATTGGAAGTTGGTTCAGTTTTGCAGATAATTCAAGTATTTGATCGTTCCAAGTATATCAGATGTCCCCAAAGGGACGATAGTACAAGTATTTGA 642 42.06 MIKYMTIKVTSDDFFFDGLSKEGNTDNPFGFGATQGNVLAFPGLNTLGLSMNRVDLARGGINAPHSHPRASESVVVIKGKVLVGFVSTSNVYYYKVLTEGEMFIIPRGLVHFQYNVGHSKAILLTAFNSQLPGAVIVSRTLFASNPPIPLEILTKTFQVDDGVINSIESNATALQIYRSIRYKLEVGSVLQIIQVFDRSKYIRCPQRDDSTSI 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 800474 801500 + CmoCh10G001750.1 Cmo10g00175 389521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00175 213 Pfam Cupin 19 161 IPR006045 -
Cmo10g00175 213 SMART Cupin_1_3 17 165 IPR006045 -
Cmo10g00175 213 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY T MEMBER 1-RELATED 7 170 - -
Cmo10g00175 213 CDD cupin_OxOx 7 170 - -
Cmo10g00175 213 SUPERFAMILY RmlC-like cupins 9 170 IPR011051 -
Cmo10g00175 213 PRINTS Germin signature 128 143 IPR001929 GO:0030145
Cmo10g00175 213 PRINTS Germin signature 95 115 IPR001929 GO:0030145
Cmo10g00175 213 PRINTS Germin signature 65 85 IPR001929 GO:0030145
Cmo10g00175 213 Gene3D Jelly Rolls 2 173 IPR014710 -
Cmo10g00175 213 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 7 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00175 - - - cmos:111429772 337.421
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00175 Cmo11g00133 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00175 Cmo-Chr10:800474 Cmo05g01056 Cmo-Chr5:8512960 2.77E-55 dispersed
Cmo10g00175 Cmo-Chr10:800474 Cmo11g00133 Cmo-Chr11:674848 1.37E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g471 . . . . Bpe12g00568 . . . . . Cma10g00163 Cma11g00176 . . Sed08g0183 . . Bhi02g00376 Tan09g2181 Cmetu02g1544 . Hepe09g0155 . . Cla06g01623 Cam06g1804 Cec06g1855 Cco06g1861 Clacu06g1764 Cmu06g1708 Cre06g2526 . . Cone13ag0100 Cone19ag0104 . . . . Blo13g00033 . . . . . . Bma08g00195 . Cmo10g00175 Cmo11g00133 . . . . . . . . . . . . . . . . . . . . Lsi06g01504 Csa01g00195 Chy02g02537 Cme02g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004893 1 2 1 1 1 2 0 2 2 2 1 2 1 2 2 1 2 3 0 2 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00175 Cmo_Chr10 FPKM 34.592785 33.560116 41.930111 37.695686 32.963947 32.546684 35.773399 24.263557 21.904758 23.503887